Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03270 613 / 0 DNA-binding protein, putative (.1) AT5G35970 250 / 6e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 171 / 3e-45 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 160 / 9e-42 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 155 / 8e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 152 / 6e-39 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 150 / 3e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 138 / 4e-34 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT5G37150 129 / 2e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65780 129 / 4e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026309 [exp] 724 / 0 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10024974 [exp] 278 / 1e-86 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024527 [exp] 276 / 4e-82 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 169 / 1e-44 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 169 / 1e-44 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 149 / 7e-38 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10037303 [exp] 148 / 3e-37 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 145 / 2e-36 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 143 / 1e-35 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054600 [exp] 655 / 0 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 257 / 2e-75 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 167 / 8e-44 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 166 / 1e-43 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.014G180200 [exp] 155 / 7e-40 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.017G056700 [exp] 150 / 2e-38 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 147 / 5e-37 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 145 / 1e-36 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 142 / 1e-35 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077700 [exp] 136 / 1e-33 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042360 pacid=23153535 polypeptide=Lus10042360 locus=Lus10042360.g ID=Lus10042360.BGIv1.0 annot-version=v1.0 ATGCCAAATATACTATTATTTGCTGCGGGAGGAAGCAAAATTGTATCAGTCGTCATCAGTAACGGAAAAAATAGAGCAGCTGCAGCAATGGAGAAGAACA ACCAGGCGGGGAAGAAAGCTTCTTCATCATCGCCAATGTCGCCCATATCTCTCGAACAATTCGTCTCCACCATGTCTCCTTTGATTGATATGGAAAAGGT TTTCCGTCTCGAAGCTGAGATTTCAGCCTCCATCACTTCGGGTGCTTCCAGAAACTTGGAAACTGCCCAAAAGCGGGGCTCTGCGCTTATCAATCTAAAG TGCGTCGACGCCCAGTCTGGGCTGATGGGGAAAACTCTTCTGGAGTTCCAATCAAACAAAGCAGACGTTCTTCCTGCTCACAAGGTTACGTATCGTAGGA TGAAGGATGCATTGATACAATTGAGTAAAGGTGTGCTGAAGGGACCTGCTGCAGAGTTGGTTCCGGTTCTGTTTGGTGAGAGACAGCCAACTACAGCAAA GAAGGATGTTACGTTCACTTCATTTAACTCCAACCTTGATCATTCTCAGGTACTGCGCGGAGATAACAGCAGTTTGGCTAATGACATTCGTAAGGAGATG AAGGCGTTAAATGGGAAGTTGTTGAAGGCCAAAGACAAAAACACTAGAAGAGAGATCCAGAAAGAGCTCAGAATACTCACAAAAGAAGAGCGTAAAAGAC AGCAGTTAGCTGTTAAGGATGTGATTAAAACTGCAGATGTGGTCTTGACGACTCTAACTGGTTCTGCTACACGTAAGCTGGAGTCAACATCATTTGATTT GGTGATTATTGATGAAGCTGCTCAGGCGCTTGAGATTGCTTGCTGGATGCCTTTGTTAAAGGGGTCCAGATGCATACTTGCTGGTGACCATCTTCAGCTT CCTCCAACCATCCAGAGTGTTGAAGCAGAGAAGAAAGGCTTGGGAAGAACCCTATTTGAGCGTCTAGCAGATCTCTATGGCAATGAAATTACCGCTATGC TTACGGTCCAGTACCGCATGCATGAGCTTATTATGAACTGGTCTTCTGAGGAGCTTTATGACAGCAAGATCGAAGCCCATCCAAGCGTTGCAGCCCATCT ACTGTGTGATCTTGAGGGTGTAAACAAGTCATCCTCAACAGAACCTACACTTCTTCTTGTGGATATAGCAGGGTGTGACATGGAAGAAAAGAAAGATGAA GAAGATAGTACGCTGAATGAAGGAGAAGCTAAAGTTGCGATTGCTCATGCGAAGAGACTAGTTCTCTCTGGAGTTCAGGCTTCCGATATTGGAATAATTA CACCTTATGCTGCACAGGTCGTTTTGTTGAAAATTCTAAGAGGCAGTGAAGACAAGCTGAAGGAAGTGGAGATTTCTACGGTTGATGGTTTCCAGGGTCG GGAGAAGGAAGCTATCATTATTTCAATGGTTCGATCGAATTCCAAGAACGAGGTTGGGTTTCTAAGTGATAGGAGACGGATGAATGTTGCAGTGACACGG GCAAGAAGGCAGTGCTGCATTGTTTGTGATTCAGAAACAGTGAGTAGCGATGCCTTTCTGAAGCGATTGGTCGAGTATTTCGAGGAGCATGGCGAGTATC TCAGTGCCTCTGAGTACATCGACGAATAA
AA sequence Show only first row Show all	>Lus10042360 pacid=23153535 polypeptide=Lus10042360 locus=Lus10042360.g ID=Lus10042360.BGIv1.0 annot-version=v1.0 MPNILLFAAGGSKIVSVVISNGKNRAAAAMEKNNQAGKKASSSSPMSPISLEQFVSTMSPLIDMEKVFRLEAEISASITSGASRNLETAQKRGSALINLK CVDAQSGLMGKTLLEFQSNKADVLPAHKVTYRRMKDALIQLSKGVLKGPAAELVPVLFGERQPTTAKKDVTFTSFNSNLDHSQVLRGDNSSLANDIRKEM KALNGKLLKAKDKNTRREIQKELRILTKEERKRQQLAVKDVIKTADVVLTTLTGSATRKLESTSFDLVIIDEAAQALEIACWMPLLKGSRCILAGDHLQL PPTIQSVEAEKKGLGRTLFERLADLYGNEITAMLTVQYRMHELIMNWSSEELYDSKIEAHPSVAAHLLCDLEGVNKSSSTEPTLLLVDIAGCDMEEKKDE EDSTLNEGEAKVAIAHAKRLVLSGVQASDIGIITPYAAQVVLLKILRGSEDKLKEVEISTVDGFQGREKEAIIISMVRSNSKNEVGFLSDRRRMNVAVTR ARRQCCIVCDSETVSSDAFLKRLVEYFEEHGEYLSASEYIDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03270			DNA-binding protein, putative ...		Lus10042360 [exp]	0	1
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	11.8	0.8767
AT2G40600			appr-1-p processing enzyme fam...		Lus10034226 [exp]	14.5	0.8456
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	18.7	0.8731
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10036451 [exp]	22.7	0.7998
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	23.7	0.8708
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	27.0	0.8581
AT5G61820			unknown protein		Lus10003210 [exp]	28.5	0.8560
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	30.4	0.8617
AT1G16670			Protein kinase superfamily pro...		Lus10019933 [exp]	31.4	0.8520
AT5G40460			unknown protein		Lus10002514 [exp]	34.3	0.7847

Compare expression of checked genes

Lus10042360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.