Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01150 64 / 1e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G12670 62 / 7e-12 Homeodomain-like superfamily protein (.1) AT5G03780 61 / 1e-11 TRFL10 TRF-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026308 [exp] 237 / 6e-79 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10012209 [exp] 110 / 1e-28 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020771 [exp] 50 / 2e-07 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024200 [exp] 45 / 7e-06 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10007348 [exp] 44 / 2e-05 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10042209 [exp] 42 / 5e-05 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10017320 [exp] 41 / 0.0002 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054401 [exp] 94 / 4e-23 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G053300 [exp] 89 / 3e-21 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 64 / 2e-12 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.013G154500 [exp] 42 / 4e-05 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042361 pacid=23153523 polypeptide=Lus10042361 locus=Lus10042361.g ID=Lus10042361.BGIv1.0 annot-version=v1.0 ATGAGTTCAGGAGAACAGGTGCCAAGTGAAGGAGCAATCAAGAAACAAGTTATGGAAGAGATTTGTGTGCCCAAGCTAGTGATGCCTATTCGTTCTATCC CACCGGGTGGAGAATTATGCAATGGAAATGATCAAGCCGGGAACTCCGGGGACTCCTTAAGTTCGAGGAAGAGAAAACGTAACGACGCGTTGATTTCTAC TTTGAAGAATCTGAGCAGCGATGGTGAATCAAATTCTTGTTTGAGACGAATTAAAATTCCATGGACATTGCAGGAAGAAAAGATGCTTAAGGAAGGGTTA CAGAAGTTCTCCAACAATGGAAGAATTCCATGGAAAACCATATTGGACTATGGGATTTCTGTTTTTGGTGATGTTCGCACTGCAGAAGATCTTAGGACCA AATGGAAGAATATGTGCAAAGCAAGCCGCGCATTGTAG
AA sequence Show only first row Show all	>Lus10042361 pacid=23153523 polypeptide=Lus10042361 locus=Lus10042361.g ID=Lus10042361.BGIv1.0 annot-version=v1.0 MSSGEQVPSEGAIKKQVMEEICVPKLVMPIRSIPPGGELCNGNDQAGNSGDSLSSRKRKRNDALISTLKNLSSDGESNSCLRRIKIPWTLQEEKMLKEGL QKFSNNGRIPWKTILDYGISVFGDVRTAEDLRTKWKNMCKASRAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	0	1
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	2.0	0.8206
AT3G26350			unknown protein		Lus10011406 [exp]	2.4	0.8284
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	5.1	0.8263
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	8.4	0.8189
AT5G07670			RNI-like superfamily protein (...		Lus10031741 [exp]	10.2	0.7155
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	11.0	0.7808
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	12.1	0.7702
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	13.6	0.8227
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	13.7	0.8110
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	14.1	0.8066

Compare expression of checked genes

Lus10042361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.