Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02420 613 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 197 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G61360 194 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 194 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 187 / 6e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 171 / 3e-47 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 169 / 3e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 170 / 5e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 169 / 6e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 168 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026306 [exp] 822 / 0 AT1G02420 522 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001784 [exp] 214 / 5e-63 AT3G61360 490 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 189 / 1e-53 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 191 / 3e-53 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 189 / 4e-53 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 190 / 5e-53 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042307 [exp] 186 / 2e-52 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 176 / 7e-49 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015827 [exp] 176 / 1e-48 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079400 [exp] 739 / 0 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G130400 [exp] 219 / 8e-65 AT3G61360 540 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 202 / 1e-58 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 186 / 8e-53 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 187 / 9e-53 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 177 / 4e-49 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 175 / 3e-48 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 173 / 4e-47 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G055500 [exp] 167 / 1e-45 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G098600 [exp] 162 / 2e-43 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042362 pacid=23153984 polypeptide=Lus10042362 locus=Lus10042362.g ID=Lus10042362.BGIv1.0 annot-version=v1.0 ATGATCATAAAGGCCACCTCCCTTTCGTTCCAGACTAATCCAAGGTATGCCTCTAGAACCTCTTGTCTCCTCCTCACTTGTTCCCCCTTCAGCAGTGAAT CCTCTAATCAGAACGACGACGTAGAAACCATTTACCGCGTCATCAACACCGTAACCCATCCCCAAGACCTGAAACAGTCGTTAAAATCGACTGATATCTT CCTCTCCAACGATGTAATCGACAAGGTGTTGAAGAAATTCCGCTTCAGCCACGGGAACCCTCTTAAAGCCCTTGACTTCTTCAAATTGACAGGAGATAGA AGAGGGTTTTACCACACTCCATTTTCATTGGACACCATGCTCTACATTCTCGGCAGGAGCCGCAAATTCGACCAAATCTGGGATGTCCTCGTCGACATGA AGAGGAAAGACGCCAACTTGATATCCCCAAGAACTGTGCAAGTGGTTTTGGGTAGGATTGCTAAGCTCTGCTCCGTTAGGATGACGGTCGAGTCATTCCG GAAGTTCAAGAAGCTTGTTCCTGAGTTTGACACCTCTTGTTTTAATGCTCTCTTGAGAACTCTGTGTCAGGAGAAGAGCATGGTTGATGCTAGAAATGCC TACCACGCTTTGAAAGCGGAGTTCAGGCCGAATTTGTACACTTTCAACGTACTTCTCTCCGGATGGAAGTCCGTAGAGGAAGCTGAGTTATTCTTCCGGG AGATGAAGGAATTCGGCGTGACTCCGGATGTGGTTTCGTATAATTCGTTGATCGACGTGTACTGTAAAGGAGGAGAATTGAAGAAAGCGTATGAGATGGT TGAAAAGATGAGGGATGAAGATATATCGCCTGATGTGATAACTTATACCAGCATCATTGGAGGCTTAGGGTTGGCTGGTCAGCCGGATAAAGCGAGATAT GTGCTTAAGGAAATGAAGGAATATGGATGTTACCCGGATGTAGCAGCGTATAATGCTGTGATCCGGAACTATTGTATCGCGAAACGGCTTCCTGATGCGT TTGCTTTGGTGGATGAAATGCAAGCGAATGGGTTGAATCCAAATTCGACGACCTATAATTTGTTCTTTCGTGTGTTTTATTGGTCGAACGACCTGTGTAG TTCGTGGAGCTTGTACGAGAAAATGATGAAGGATGATACTTGTTGTTGCCTTCCGAATACTCAGTCGTGTATGTTTCTAATCAAGCTGTGTAGGAGGCAT GAAAGAGTGGATATGGCGTTAAAGCTTTGGGATGATATGGTGGATAAGAGTTTCGGGTCTTACACTTTGGTATCCGATGTGTTGTTTGATTTGCTATGTG ATGCTGGGAAGTTGTTGGAAGCTGAGAAATGTTTCTTGCAGATGGTAGAGATGGGACAAAAGCCGAGTTCTGTCTCTTTTAGGAGGATCAGGGTGCTTAT GGAATTAGCAAACAATCACGCTGGTATCCGGAACTTGTCGGAGAAGATGGCCGTTTTCGATTCTTCAATTCGAGTTCCTCAAACAGATGAGAGGAGAAGG GCAGGAAGTTTGCAAGTCGATCCGGAAGCATTTGACCACCGAGTGAAAGGAGACCGTCAATGGACTGGTGAAGCATACCTGGGGAACGCTTAA
AA sequence Show only first row Show all	>Lus10042362 pacid=23153984 polypeptide=Lus10042362 locus=Lus10042362.g ID=Lus10042362.BGIv1.0 annot-version=v1.0 MIIKATSLSFQTNPRYASRTSCLLLTCSPFSSESSNQNDDVETIYRVINTVTHPQDLKQSLKSTDIFLSNDVIDKVLKKFRFSHGNPLKALDFFKLTGDR RGFYHTPFSLDTMLYILGRSRKFDQIWDVLVDMKRKDANLISPRTVQVVLGRIAKLCSVRMTVESFRKFKKLVPEFDTSCFNALLRTLCQEKSMVDARNA YHALKAEFRPNLYTFNVLLSGWKSVEEAELFFREMKEFGVTPDVVSYNSLIDVYCKGGELKKAYEMVEKMRDEDISPDVITYTSIIGGLGLAGQPDKARY VLKEMKEYGCYPDVAAYNAVIRNYCIAKRLPDAFALVDEMQANGLNPNSTTYNLFFRVFYWSNDLCSSWSLYEKMMKDDTCCCLPNTQSCMFLIKLCRRH ERVDMALKLWDDMVDKSFGSYTLVSDVLFDLLCDAGKLLEAEKCFLQMVEMGQKPSSVSFRRIRVLMELANNHAGIRNLSEKMAVFDSSIRVPQTDERRR AGSLQVDPEAFDHRVKGDRQWTGEAYLGNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02420			Pentatricopeptide repeat (PPR)...		Lus10042362 [exp]	0	1
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	127.2	0.5910

Compare expression of checked genes

Lus10042362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.