Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57570 761 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026305 [exp] 461 / 3e-151 AT3G57570 229 / 2e-65 ARM repeat superfamily protein (.1.2) Lus10026304 [exp] 337 / 4e-108 AT3G57570 137 / 5e-37 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054100 [exp] 962 / 0 AT3G57570 967 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042364 pacid=23153686 polypeptide=Lus10042364 locus=Lus10042364.g ID=Lus10042364.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGGAAATAAACCAGCTGATATGGAAATCGGAGTTGCTACCGGAATCCAATGTCTCAGTTACTCTGGGAAGAGCGATGTCTTCTCTGCTTG GTGCTCGTCCCAAGAAGCTTCGAGCGTCCTTATCATCCGGCCTTACTCCAGATTCTTCTTCGAAAAGGCCTTTATACGGTACCAAGAATTTGATTTTCGA ATTCGGAGTTTCTGCAATTTCGGAAATCTTGGATTTCAACCTCTCCGATTCTGTTGATGTAGGTTCATTGGAAGAGCAACTTTTGTTTCTACAGAAGTAT GTCGAAGATGCAGCGGGAAGGAATGAGAAACTGGACGACGTTCTTATCCCCATCATTCAGAACTCACTCGAGAACAAAGGGTTGCGGCGTGGTGGTCAAG CTCTGCTACTTGTGAACTGGCTATTTCAAGATGCTTCTGTATTTGGAGCTGTTGCCATGAATCTCGCAGACATTATCAAGACGAAAGATGATCGTTTCAT TTCTCTTGGCTGGTGTATACTTGTTCGTCATCTTGTGGAATATGAGAATTTTATGGATCAGTATTCGTTGTATGAGTACGAGAGGGGAGGTACGGGCTAT TTCCTCATCTTGTATCTTGATGAAACTCTTTCTCCTCCTTTTGGGAATGTTCCTATGCCAGACATAATACGGCAAGATGGATTTGAGCTGCCCTCTCGCC TTTCAGTGGCTGCTGCAGATTGTATTTTAGCTGTCAGCAAAGCATTAACCAAAAAAGCTAAGAGCAACCAACAACAGTTATTGACACCGAATGCAGCTCG TCATCCTAGGACTCCCCAATTCACTGATAGTGCAGAAAATGAAGTGAAACTGACACTTAAATCGTCAGAAGTTTCAATGAGCAAGATTTCATACTTGCTC TGGGATCAAATAGACATTCTGATTGCACTATTGCAGAAACTTCTTGTTTGGAACAAAAAAAGCAGAGCATTACATGCGAAAGGAGTGGAGCTAGTGCTTA AATGGCTACAAGGAATAAACGGGACATTGCTACTCTCATCCTGTTGGAAGCACTATGGTGGTCTACTCTACTTGGAAGATCATAATATCTCTCAGAAGTA TGAGGAGTTGCTAGACCAGTATGTATCTGGACTCCAGTACTATATGGAAAACCAAGCTGACGATCATGCAGAGAATACAAGTAGTGGCTTGGAAACTAGA AAGTTTTTCCTCAATTGTCTATGCCTCCTCCTGGGCCGCTTAGACTGCAAAACATTTGAAAGCTCAATGTCGGAACACTGGGTACAGATATCTCGTATTC TCTTATTACAGCTTCACTGCACAGATGAAGATGTGGTAACTGGAGCTGTTTGCTTACTGAAGGCATCCATTTTCTACAATGGCACTTCATCTGCACGCAT TTCTGACAATAAGCAAATGAATATACTGTTACCAGAGTTACTTAAGCTTCTTGATGAACGTGATACCACAGCTAGAGCCGTTGTTATGCTCATAGCTGAG TACTGCTCCATGAGCACTGGAAATCATTGTCTTGGACAGATTCTCCAGCGTCTTGCTTCGGAAGATGCTAAGCAGAGGAGAAATGCCATTGATGTCATAT CAGAAGTGATAAACGCAGATAACCTTCCTTCTGTGGCAAGGCAAGACATTGCCAACAACTTGCTGAATCGCCTTGTTGATGAAGAAACTGTAATACGTGA TCAAGCATCCAATTTGCTTGCCAAAATAGATCCATCTCTTTTCTTGCCAGCATTAGTTGCCCTCCTCTACTCACCAGATGATAGGGTGAGAATATCAGCT GCCAGCAATTTTGTAGCTGTGTTCAATTATCATGGCCAGAAACCTGATCTTATATGCCTGCTGCTGGATTGCCTTAGCAACCTAAACCAGAGCCTAGATC TCTCTCAAGATTCAAAGAGGGAAAGTGATCCAGTAACTGAGCTAATACCAGAGTGGTCTAAAACTGTCCAAGATTGGAAACCCGTTGTTGCAGTGTTAAT TGACAAGTTGTTTTCAGAGCCTGCAAATGCAACTATTGTCCGTTTCATGAGCTGTATAAGCGATCACTTGGCAGAAGTTGCTGATTTGGTCCTTAATCAT GTCTTATTGCAAATGAAAGGACAAGAAATTGACGAAAGCTCCATCTCTCAGCATGAAAGTGGATCATGCACAAGTCAAGACTCAGTGAAGCAGCAGTTAT TGTTTTATCGCCTCTGTCCATTGCTTATAATCCGAATGCTTCCGCTGAGAGTATTTGATGACCTTAGTTTATCCACATTGTACGGTCAACTTGTCACCCA ACCGTTCATACTTGAGACTACAGGATCTGTTGATGTCGAAGCAGATAATGAATGCATTGCTGCATTGCTTGTCAAGAGGGCATTGAACGAGTCTGAATTT GAAGATGTTCGAAAACTTGCTGCAGAGCTTTCTGGTCGAATTCATCCTCAGATCCTGTTACCTATTGTTACTTTAGTGTTGGAAAGTGCACAAGCTGTCC ATGATACACTAAAGATTAAGGCTTGTCTGTTTTCACTTTGCACTTCTCTTGTGGTTAGAGGTGGAGAATCTTTCTCCCATTCTTCTTATCTCAAAATCAG ACGAGTGCTAGAACAGATTCTAAAATGGCCCCCTTCGGATAGTGATGAAGTCTCTAAAGCACAACGTGGATGCATCGACTGTCTGGCATTGATGATTTCT GCTGAGCTCGAAGTTCCTCTTCGATCTGGAAGAAACAGTTCAGAGAAGAAACAGTGCAGGGAAGTTCCTCCTGGATCGAAGTTGCTCCTCGATCCAGAAC ACTATGTTATTGATTACGTGATCTTTCAGCTGATAACAAACGAGGAAGTTGAAAAATCTGGAACTGAGGCAAACATCTCTAGATCATTCCGGATTTGCAT GGCCAACGTTCTCATTAGTGCTTGTCAGAAAGTCTCGGACACTAGCAAGAAATCGCTGGCTCGGAAAACACTTGAATGTCTCATACCCTCCATCAAGGGA ATAATTGGGCAAGCAGACATCAGAGCAGCTTGTGTGCAGGTTCTTTTCCAAGCTGTGTACCATCTCAAGTCTGCAGTGCTTCCATTTTCGCTTGATCTGC TTAAACTATCTTTGGAACTGCTTACAGATGGATCAGAAAAGGAAAGATTGGGAGGCGCAAAATTAATGGCGTCGTTGATGGGGAGTGAAGAGGAAGTTGT GGATAGGATATCAGGAGGTTTAGTGGAAGCAAGGTCGGTTTTGTTACAAGTTTGTAAGTCAGATCCTTCCCCTGAAATGCGACAGATATGCAGCCAGCTT CTTACTTGCATCACTCCTGCGTAA
AA sequence Show only first row Show all	>Lus10042364 pacid=23153686 polypeptide=Lus10042364 locus=Lus10042364.g ID=Lus10042364.BGIv1.0 annot-version=v1.0 MEGEEINQLIWKSELLPESNVSVTLGRAMSSLLGARPKKLRASLSSGLTPDSSSKRPLYGTKNLIFEFGVSAISEILDFNLSDSVDVGSLEEQLLFLQKY VEDAAGRNEKLDDVLIPIIQNSLENKGLRRGGQALLLVNWLFQDASVFGAVAMNLADIIKTKDDRFISLGWCILVRHLVEYENFMDQYSLYEYERGGTGY FLILYLDETLSPPFGNVPMPDIIRQDGFELPSRLSVAAADCILAVSKALTKKAKSNQQQLLTPNAARHPRTPQFTDSAENEVKLTLKSSEVSMSKISYLL WDQIDILIALLQKLLVWNKKSRALHAKGVELVLKWLQGINGTLLLSSCWKHYGGLLYLEDHNISQKYEELLDQYVSGLQYYMENQADDHAENTSSGLETR KFFLNCLCLLLGRLDCKTFESSMSEHWVQISRILLLQLHCTDEDVVTGAVCLLKASIFYNGTSSARISDNKQMNILLPELLKLLDERDTTARAVVMLIAE YCSMSTGNHCLGQILQRLASEDAKQRRNAIDVISEVINADNLPSVARQDIANNLLNRLVDEETVIRDQASNLLAKIDPSLFLPALVALLYSPDDRVRISA ASNFVAVFNYHGQKPDLICLLLDCLSNLNQSLDLSQDSKRESDPVTELIPEWSKTVQDWKPVVAVLIDKLFSEPANATIVRFMSCISDHLAEVADLVLNH VLLQMKGQEIDESSISQHESGSCTSQDSVKQQLLFYRLCPLLIIRMLPLRVFDDLSLSTLYGQLVTQPFILETTGSVDVEADNECIAALLVKRALNESEF EDVRKLAAELSGRIHPQILLPIVTLVLESAQAVHDTLKIKACLFSLCTSLVVRGGESFSHSSYLKIRRVLEQILKWPPSDSDEVSKAQRGCIDCLALMIS AELEVPLRSGRNSSEKKQCREVPPGSKLLLDPEHYVIDYVIFQLITNEEVEKSGTEANISRSFRICMANVLISACQKVSDTSKKSLARKTLECLIPSIKG IIGQADIRAACVQVLFQAVYHLKSAVLPFSLDLLKLSLELLTDGSEKERLGGAKLMASLMGSEEEVVDRISGGLVEARSVLLQVCKSDPSPEMRQICSQL LTCITPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	0	1
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	2.0	0.9203
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	3.2	0.9011
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	3.7	0.8869
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	4.0	0.8998
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	5.7	0.9005
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	6.0	0.8887
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	7.4	0.8752
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	8.8	0.8721
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	9.2	0.8907
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	10.0	0.8759

Compare expression of checked genes

Lus10042364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.