Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51340 550 / 0 MATE efflux family protein (.1.2) AT3G08040 504 / 1e-175 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT4G38380 335 / 8e-109 MATE efflux family protein (.1) AT2G38330 329 / 4e-107 MATE efflux family protein (.1) AT2G21340 53 / 4e-07 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026303 [exp] 941 / 0 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10039609 [exp] 531 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 517 / 5e-179 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 493 / 1e-170 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 492 / 7e-169 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 336 / 4e-109 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 321 / 3e-103 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 283 / 5e-89 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 279 / 8e-84 AT4G38380 501 / 2e-167 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053600 [exp] 640 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 571 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 546 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 540 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.004G183600 [exp] 345 / 2e-112 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 345 / 3e-112 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 337 / 7e-110 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.005G102800 [exp] 313 / 3e-100 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042365 pacid=23153619 polypeptide=Lus10042365 locus=Lus10042365.g ID=Lus10042365.BGIv1.0 annot-version=v1.0 ATGGGGGGTTCGTTTTGGAGAAGAATCATGCCGCCTTTTGTATTCTTCCACAACGCCAGAAGCATCTTCTCGAAAGATGATCTGTGCTTGGAACTCATGG AAATTGCAATTCCTGCTGCACTTGCTTTGGCAGCAGATCCCATTGCTTCCCTTATTGACACGGCTTTCATTGGCCATCTAGGTCCCATTGAGCTTGCAGC AGTAGGAGTTTCTATTGCTGTGTTTAATCAAGTATCAAAGATTGCAATCTTCCCAATTGTTAGTGTCACCACTTCCCTGGTTGCCCAGGAAGATACCATT GCAACATTATTTCCTGAAGATCAGGCAACAGAACTGCAAGATACCTCTTCTAATAACAAAGAAACAGACTCGTTGTTACCCAAAGTACCTGATCTGACAA CAACACCTGAATCCCAAGCCACTAACCGTAGCTTCAAAAAGGGAGCCTTTGAGAAACGATACATCCCATCAGCTGCTTCAGCGATGGTCGTTGGTTGTGT ACTTGGTTTGGTTCAAACTTGCAGTCTCATTTTGGCTGCTGAACCTATCCTCGAATACATGGGTGTGCATAAGGATTCTCCCATGCTAAGACCTGCACAA AAATACTTAACCTTGAGGTCACTTGGGGCTCCTGCGGTTCTTCTGTCTTTGGCTATGCAAGGGGTTTTCCGGGGAATCAAGAACACAAGAACTCCTCTTT TTGCTACAGTTCTTGGAGATGTTGCAAATATTATCCTAGATCCTATATTCATATTTGTATTCAAACTGGATGTCAGTGGTGCTGCCATTGCCCATGTTAT TTCTCAGTACTTGATTTCCATAGTCCTTATGTGGCAATTAGTTCAAGAAGTTGATGTATTGCCAGCAAGCATCTGGGACCTGCAACTCGGCCGCTTTCTC AAAAGTGGATTCATGTTGCTAATGAGAGTGATAGCTGCAACATTCTGTGTTACCCTGGCAGCGTCTTTGGCTGCTAGGGATGGACCAACATCAATGGCAG CATTTCAGGTTTGCTTGCAGATCTGGTTGGCGACCTCTTTGCTGGCCGATGGCCTCGCAGTGTCTGGACAGGCAATCCTTGCAGGTGCATTTGCGAAGAA CGACCTCGACAGGGCTGAGGATATTGGTTGTCGTGTGTTGCAGTATGCTTTTTTTCTAGGTGTGGCACTGGCTATTGTTCTCTATCCAGGGTTGCTGTAT GGTGCAGGATTATTTACGGAAGACGTTGATGTTTTGAAACTCATTGGTCTTGGTGTCCCGTTTGTTGCGGCAACTCAACCCATCAACGTTCTGGCCTTCG TCTTCGATGGAGTCAACTACGGAGCATCTGATTTTGCATATTCTTCATACTCAATGATCGTTGTGGCAATAATTAGTTTAATTAGTCTCTACAAATTAGC TTTGAGCCACGGGTTTCTCGGTATCTGGGTTGCTTTAACCCTCTTCATGACGTTGCGTTGCTTCGCCGGATTTCTAAGGATAGGATTCGGGCTAGGACCT TGGAGTTTCCGGAGGAGGATGAATATATGA
AA sequence Show only first row Show all	>Lus10042365 pacid=23153619 polypeptide=Lus10042365 locus=Lus10042365.g ID=Lus10042365.BGIv1.0 annot-version=v1.0 MGGSFWRRIMPPFVFFHNARSIFSKDDLCLELMEIAIPAALALAADPIASLIDTAFIGHLGPIELAAVGVSIAVFNQVSKIAIFPIVSVTTSLVAQEDTI ATLFPEDQATELQDTSSNNKETDSLLPKVPDLTTTPESQATNRSFKKGAFEKRYIPSAASAMVVGCVLGLVQTCSLILAAEPILEYMGVHKDSPMLRPAQ KYLTLRSLGAPAVLLSLAMQGVFRGIKNTRTPLFATVLGDVANIILDPIFIFVFKLDVSGAAIAHVISQYLISIVLMWQLVQEVDVLPASIWDLQLGRFL KSGFMLLMRVIAATFCVTLAASLAARDGPTSMAAFQVCLQIWLATSLLADGLAVSGQAILAGAFAKNDLDRAEDIGCRVLQYAFFLGVALAIVLYPGLLY GAGLFTEDVDVLKLIGLGVPFVAATQPINVLAFVFDGVNYGASDFAYSSYSMIVVAIISLISLYKLALSHGFLGIWVALTLFMTLRCFAGFLRIGFGLGP WSFRRRMNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	0	1
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	2.0	0.9363
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10014412 [exp]	3.9	0.9377
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	3.9	0.9474
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	5.8	0.9413
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	11.4	0.9140
AT1G59171			Inositol-pentakisphosphate 2-k...		Lus10033202 [exp]	12.3	0.8928
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	12.4	0.9122
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020481 [exp]	13.5	0.9073
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	13.7	0.9060
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	16.5	0.8548

Compare expression of checked genes

Lus10042365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.