Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33040 508 / 0 ATP3 gamma subunit of Mt ATP synthase (.1) AT1G15700 120 / 5e-31 ATPC2 ATPase, F1 complex, gamma subunit protein (.1) AT4G04640 115 / 4e-29 ATPC1 ATPase, F1 complex, gamma subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012200 [exp] 607 / 0 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007534 [exp] 496 / 2e-179 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1) Lus10040068 [exp] 108 / 1e-26 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10002078 [exp] 107 / 4e-26 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Lus10021535 [exp] 105 / 2e-25 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057700 [exp] 578 / 0 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.012G066100 [exp] 567 / 0 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.011G024700 [exp] 122 / 9e-32 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.004G014850 [exp] 110 / 2e-27 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G003800 [exp] 54 / 2e-08 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [flax] [poplar] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Lus10042366 pacid=23153873 polypeptide=Lus10042366 locus=Lus10042366.g ID=Lus10042366.BGIv1.0 annot-version=v1.0 ATGGCGACGATGGCTGCTTTGAGACGCGAAGGGAGGCGATTCGCCGGCTCTTTTACCTCTCCCCAACCAATGCCCGCTATCCGATCCGCTCTCATCTCCG AGGAGCAAGTACCTTTTGGAGTGCGTTCAATCTCAACTCAAATCGTTAGGAATCGGATGAAGAGTGTCAAGAATATTCAAAAAATCACCAAGGCAATGAA GATGGTTGCTGCCTCAAAGTTGCGAGCAATTCAAACAAAAACTGAAAAATCTCGTGGCCTCTGGCAGCCTTTTACTGCCCTTCTTGGTGACACTCCTGCG GTCGAAGTGAAGAAGAATGTCATTGTCACTATATCCTCTGACAAAGGTCTTTGTGGAGGAATCAACTCTACCTCAGTCAAGATAAGCAAGGCTATTAGCA AGTTGACTTCTGGTCCTGAAAAGGAAGTGAAGTATGTGATCTTGGGAGAAAAGGCGAAAGCCCAACTAGTGCGTGATTCAAAGAAAGATATTGAATTATG CATCACTGAGCTACAAAAGAATCCCTTGAATTTCACCCAGGTTGCTGTGTTAGCAGATGATATCCTAAAGAATGTAGAATACGATGCCTTGAGGATTGTC TTCAACAAGTTTCAGTCAGTTGTCTCATTCCTGCCAACTATGGCGACTCTATTATCTCCTGAGGTGGTTGAGAGAGAGGCTGAATCTGGTGGTACACTTA GCAATTTAGACTCCTATGAGATTGAAGGTGGTGAAATGAAAGGGGAAATTCTGCAGAATCTTACAGAGTTCCAGTTTTCTTGTGTAATGTTCAATGCAGT ACTAGAGAATGCTTGCAGTGAGCAAGGGGCAAGAATGTCTGCCATGGACAGTTCAAGCAGGAATGCTGGAGATATGCTTGACCGCCTAACTCTAACTTAC AACAGGACTCGTCAAGCGTCAATTACAACGGAGCTGACAGAGATTATCTCTGGAGCTTCTGCACTGGAAGGCTAA
AA sequence Show only first row Show all	>Lus10042366 pacid=23153873 polypeptide=Lus10042366 locus=Lus10042366.g ID=Lus10042366.BGIv1.0 annot-version=v1.0 MATMAALRREGRRFAGSFTSPQPMPAIRSALISEEQVPFGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQTKTEKSRGLWQPFTALLGDTPA VEVKKNVIVTISSDKGLCGGINSTSVKISKAISKLTSGPEKEVKYVILGEKAKAQLVRDSKKDIELCITELQKNPLNFTQVAVLADDILKNVEYDALRIV FNKFQSVVSFLPTMATLLSPEVVEREAESGGTLSNLDSYEIEGGEMKGEILQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTY NRTRQASITTELTEIISGASALEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	0	1
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	1.7	0.9398
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	2.0	0.9344
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	4.2	0.9222
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	4.5	0.9326
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	5.1	0.9178
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10014797 [exp]	8.7	0.8885
AT4G21105			cytochrome-c oxidases;electron...		Lus10006275 [exp]	9.5	0.9326
AT3G15395			unknown protein		Lus10038792 [exp]	9.9	0.8971
AT1G42960			unknown protein		Lus10012242 [exp]	13.0	0.9238
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	14.1	0.9217

Compare expression of checked genes

Lus10042366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.