Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57540 112 / 2e-30 Remorin family protein (.1) AT2G41870 108 / 8e-29 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026302 [exp] 186 / 1e-59 AT3G57540 209 / 1e-67 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054400 [exp] 129 / 8e-37 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 124 / 4e-35 AT3G57540 196 / 2e-61 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10042367 pacid=23153801 polypeptide=Lus10042367 locus=Lus10042367.g ID=Lus10042367.BGIv1.0 annot-version=v1.0 ATGAGGCTGGGGAGGGAAACGGCAGCGCCGTCAACTTCGACAACGACGGCGTCGTCGTCTGAGCAGCAGCGGGTGGAAGAAGTGATGACGGTGGGGAGGG TAAAAAAGGATGAAGTGGAGAGCAAGATAAGTGCATGGGAGAACGAGGAGATTGCTAAGGTTAATAATAGGTTGAAAAGAGACGAAGCTATCATTAATGG CTGGGAGAATGATAAGGTTCAGAACGCCACTGCTTGGATGAACAAGATCGAGGTAACTTATACAAAATTCCAAGAATCCATAGATGCAGCAGCAGCAGCA GCAGGAGTTATGAGTGCTCTAATATTAAGGGACACATCAGGAATCCACAACCCACTTAAACCCAGACAGAATTCTGAGCTTAATTGGAGAAAACTGGAAG AGAAGAGAGCAAGAGCAGCAGAGAAGATGCAGAATAAGGTAGCCAAAGCACACAGGAAAGCTGAGGAGAAGAGAGCATCTGCTGAGGCCAAGAGAGGTAC TAAAGTTGCTCGAATTCTTGAGCTTTCCAATCTCATGAGAGCTGTTGGTAAACCACCCACCAAAAGATCCTTCTGGTGA
AA sequence Show only first row Show all	>Lus10042367 pacid=23153801 polypeptide=Lus10042367 locus=Lus10042367.g ID=Lus10042367.BGIv1.0 annot-version=v1.0 MRLGRETAAPSTSTTTASSSEQQRVEEVMTVGRVKKDEVESKISAWENEEIAKVNNRLKRDEAIINGWENDKVQNATAWMNKIEVTYTKFQESIDAAAAA AGVMSALILRDTSGIHNPLKPRQNSELNWRKLEEKRARAAEKMQNKVAKAHRKAEEKRASAEAKRGTKVARILELSNLMRAVGKPPTKRSFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	0	1
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	1.0	0.9458
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	2.4	0.9017
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	2.4	0.8306
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	2.4	0.8993
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	2.8	0.8830
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	3.2	0.8704
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	4.0	0.8267
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	5.9	0.8292
AT1G50660			unknown protein		Lus10002069 [exp]	8.2	0.8037
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	9.1	0.7658

Compare expression of checked genes

Lus10042367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.