Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39680 82 / 7e-19 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 81 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11290 79 / 1e-17 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 77 / 7e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 76 / 1e-16 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 74 / 4e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 73 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 72 / 2e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 72 / 3e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56570 71 / 5e-15 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015225 [exp] 93 / 1e-22 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 89 / 4e-21 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010850 [exp] 85 / 1e-19 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10024381 [exp] 84 / 2e-19 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 81 / 2e-18 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 76 / 1e-16 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 76 / 2e-16 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 75 / 3e-16 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040648 [exp] 75 / 3e-16 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053100 [exp] 123 / 2e-33 AT2G33680 388 / 3e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 84 / 3e-19 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145510 [exp] 83 / 3e-19 AT2G34400 462 / 3e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G082200 [exp] 82 / 7e-19 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 81 / 2e-18 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 80 / 4e-18 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 79 / 1e-17 AT3G22690 582 / 0.0 unknown protein Potri.018G067500 [exp] 78 / 3e-17 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G186500 [exp] 77 / 5e-17 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 77 / 6e-17 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042368 pacid=23154019 polypeptide=Lus10042368 locus=Lus10042368.g ID=Lus10042368.BGIv1.0 annot-version=v1.0 ATGCATGGATTAGTTACAAAGTTCGGGTTTCTCTATGAAGCTGCTATTGTATCTGTTCTGGTGGAATTCTATGCAAAATGCGGAAAGCTGCAGACTGCCA GAATAATGGGCAGTTCCAATGCCTTCCTGAGAGAGTTCATGGATAAGAGTGGAGCTGATGACGAAAATCCGCTGGTTTTGTTTAGCCAGTTAAGATCTTA TGGAAATAAACCAGTTTCTTTTTCTTTGTCGCGACTCTATAGTATATTTGCTACTCAGACTTCTTTAGCCAGCGGGAAAACCCTTCAGGCTTATGCTATC GAAGCCGGTTATGAGAAGGATGTTTATGTGGCAAACTCCATGGTTACATTGTATGCCAAATGTGGAAGCGTTGAAGACGCTCATCGAATATTCAGTGGCA TCAATGGCCATGATTTTATGTCATGGAATGCTTTTAGTTTCTGCTTATGGTATTCATGGTAA
AA sequence Show only first row Show all	>Lus10042368 pacid=23154019 polypeptide=Lus10042368 locus=Lus10042368.g ID=Lus10042368.BGIv1.0 annot-version=v1.0 MHGLVTKFGFLYEAAIVSVLVEFYAKCGKLQTARIMGSSNAFLREFMDKSGADDENPLVLFSQLRSYGNKPVSFSLSRLYSIFATQTSLASGKTLQAYAI EAGYEKDVYVANSMVTLYAKCGSVEDAHRIFSGINGHDFMSWNAFSFCLWYSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10042368 [exp]	0	1
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	11.3	0.5805
AT2G38660			Amino acid dehydrogenase famil...		Lus10034187 [exp]	66.3	0.4656
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	66.6	0.4737
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005600 [exp]	78.9	0.4553
AT4G32190			Myosin heavy chain-related pro...		Lus10001498 [exp]	82.9	0.4668
AT5G05220			unknown protein		Lus10029015 [exp]	84.9	0.4627
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	111.9	0.4637
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033389 [exp]	176.4	0.4186

Compare expression of checked genes

Lus10042368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.