Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) AT3G29000 117 / 4e-33 Calcium-binding EF-hand family protein (.1) AT3G47480 77 / 2e-17 Calcium-binding EF-hand family protein (.1) AT2G43290 75 / 2e-16 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 71 / 4e-15 Calcium-binding EF-hand family protein (.1) AT1G05990 69 / 5e-15 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G20780 67 / 6e-14 CML42 calmodulin like 42 (.1) AT5G44460 67 / 7e-14 CML43 calmodulin like 43 (.1) AT4G03290 63 / 8e-13 EF hand calcium-binding protein family (.1) AT3G07490 63 / 1e-12 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026301 [exp] 301 / 2e-105 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10007536 [exp] 209 / 7e-69 AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) Lus10012199 [exp] 201 / 5e-66 AT5G39670 131 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10034463 [exp] 105 / 2e-28 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10019090 [exp] 105 / 3e-28 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10018012 [exp] 75 / 6e-17 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10021134 [exp] 67 / 1e-13 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10038088 [exp] 67 / 2e-13 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 67 / 2e-13 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084800 [exp] 153 / 6e-47 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.004G122900 [exp] 126 / 2e-36 AT5G39670 141 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.008G087900 [exp] 91 / 5e-23 AT3G29000 62 / 2e-12 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 67 / 8e-14 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.012G048200 [exp] 66 / 1e-13 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.006G065900 [exp] 66 / 3e-13 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 66 / 4e-13 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 64 / 1e-12 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G112500 [exp] 64 / 1e-12 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.015G039500 [exp] 63 / 1e-12 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042369 pacid=23153940 polypeptide=Lus10042369 locus=Lus10042369.g ID=Lus10042369.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCCAACTGTACTACTTGATTACCCCTCAGTCGGAGCTCTTCAGCACCAAGCAGCAATCTACTTCTTCTTCGCTAATGATTTTATTCTTTG ACATCATCTTGTGCAAGCTGATTTTCGATCGGATCAGGAGTTTCCCCAAAATCATCTCCAGATTTTCATTTTTCCTCCGATCTCTACTCAGATTCGGCGG TGGAGCAGAGTTGCAGAGTACGACAACTGATCTAGTTATGAGCAGAGAGGATGTTGAGCTAGTGATGGGAAAGCTCGGATTTTTATCCAACCCAGAGGGG CAAAATCATGACCAAGCAATGGGTAGTGGTCAGATATTGGAGTTGTTTGATGAGGAAGAGCCCAGCTTGGGGGAAGTGAAAGAAGCATTTGATGTTTTTG ACGAGAACAGAGATGGGTTCATTGATGAAGCTGAGTTGCAGAGAGTGATGGTTCGGCTGGGATTGAAGGAAGGATTTGAGATTGATGGATGCTGCAAGAT GATCAGAGCTTTTGATGAGAATGGTGATGGAAGGATAGATTTCGGTGAATTTTTGAAGTTCATGGAGAATAGTTTTTGTTGA
AA sequence Show only first row Show all	>Lus10042369 pacid=23153940 polypeptide=Lus10042369 locus=Lus10042369.g ID=Lus10042369.BGIv1.0 annot-version=v1.0 MAFFQLYYLITPQSELFSTKQQSTSSSLMILFFDIILCKLIFDRIRSFPKIISRFSFFLRSLLRFGGGAELQSTTTDLVMSREDVELVMGKLGFLSNPEG QNHDQAMGSGQILELFDEEEPSLGEVKEAFDVFDENRDGFIDEAELQRVMVRLGLKEGFEIDGCCKMIRAFDENGDGRIDFGEFLKFMENSFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	0	1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	1.4	0.9292
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	1.7	0.9467
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	3.5	0.9062
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	5.7	0.9203
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	6.0	0.9188
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	6.9	0.8737
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	6.9	0.8567
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	8.4	0.8909
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	8.8	0.8913
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	8.8	0.9048

Compare expression of checked genes

Lus10042369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.