Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57530 768 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT5G12480 748 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT5G19450 745 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT2G41860 743 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT3G51850 671 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G74740 657 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 643 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 594 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 517 / 2e-180 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 512 / 2e-178 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026742 [exp] 779 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10009947 [exp] 759 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 743 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 737 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 686 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 682 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 671 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10030134 [exp] 647 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10008631 [exp] 628 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054600 [exp] 804 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 793 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 764 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 760 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G101300 [exp] 674 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G117200 [exp] 671 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.015G066200 [exp] 664 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 657 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.007G127000 [exp] 605 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.009G069200 [exp] 509 / 3e-177 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042370 pacid=23153851 polypeptide=Lus10042370 locus=Lus10042370.g ID=Lus10042370.BGIv1.0 annot-version=v1.0 ATGGGAAATTGTTGTGTAACTCCACTTGTAACAACATTCTACAAGGTAAAGAAACAAAGGAAGAGAAGGAGCCTATTTTCACGTTATGGGAATGGAGGCC ATAAAAATAATCTAATTGTGTTGAAAGAAGCGATTGGTAAAGACATTCACGAGAAGTATGAGCTTGGTGGAGAATTGGGAAGAGGAGAATTTGGAGTGAC TCACTTGTGCACCGATAAGGAGACTAGAGAAACTTTTGCATGCAAGTCAATCTCTAAGAAGAAGTTGCGGGCGGCTGTGGATATAGAGGATGTTAGGAGG GAAGTGGAAATCATGAGGCATTTGCCTCAGCATCCTAACTTTGTCACGTTACGAGATACGTACGAGGATGATACCGCGGTGCATTTGGTGATGGGGTTGT GTGAAGGTGGAGAGTTGTTCGATAGAATTGTTGCTAGAGGTCATTATACCGAAAGAGCTGCTGCTATCATCACAAGGACCATTGTCGAGGTTGTTCAGAT TTGTCATAAACATGGAGTGATGCACAGAGACCTGAAACCTGAGAACTTTTTGTTTGCAAACAAAAAGGAGACTTCACCGTTGATGGCAATTGATTTTGGA CTGTCAGTGTTCTTCAAGCCAGGCGAGAGATTTACAGAGATTGTAGGAAGTCCATATTACATGGCTCCTGAAGTCTTGAAACGGAATTACGGCCCTGAAG TAGACGTTTGGAGTGCTGGTGTCATACTCTACATATTGCTCTGCGGTGTCCCGCCTTTCTGGGCAGAAACCGAGCAAGGAGTTGCACAATCAATCATTCG ATCTATTGTGGATTTCAAGAGGGATCCATGGCCCATAGTTTCTGACAATGCTAAGGACCTTGTCACCAAGATGCTCAATCCCGATCCTAAGCTTCGCCTC ACAGCACAACAAGTGCTCGATCACCCTTGGCTTCAAAATACAAAGATGGCTCCCAATATATCTCTAGGTGATGCAGTGAAAGCAAGGCTCATGCAATTCT CTGCATTGAACAAGCTCAAGAAAAGAGCTCTGAGGGTGATTGCTGAGCACTTATCCACGGAGGAAGCTAAAGGCATAAAGGAGGGGTTTCAAGTGATGGA TGCTGGGAACAAGGGCAAGGTTAACATCGATGAGCTTAAAATCGGGTTACAAAAACTAGGCCATAAGCTCACTGAGGATGATATTCAAATCCTCATGGAA GCTGGCGATGTAGATGGGGATGGACATTTGGACTATGAAGAGTTTGTAACCATAGCCGTCCACTTGAGAAAGATTGGAAATGATGAGCACCTCCGCAAGG CTTTTGAGTTTTTTGATCGAGACAAAAGTGGTGCCATAGAAATAGAAGAGCTCAGAGAAGCTTTGGCAGATGAGGTGAGTACCAACAATGAAGAAGTTAT CAGCGCCATTATACAAGATGTTGATGCTGACAAGGATGGAAAAATAAGCTTTGATGAGTTCGCAGCAATGATGAAAGCGGGTACGGACTGGAGAAAGGCA TCAAGGCAGTATTCAAGAGAAAGATTCACCAATCTGAGTATGAAGCTAAACAAGGTTGGATCTTTACAGGTTATCGAGGATTAA
AA sequence Show only first row Show all	>Lus10042370 pacid=23153851 polypeptide=Lus10042370 locus=Lus10042370.g ID=Lus10042370.BGIv1.0 annot-version=v1.0 MGNCCVTPLVTTFYKVKKQRKRRSLFSRYGNGGHKNNLIVLKEAIGKDIHEKYELGGELGRGEFGVTHLCTDKETRETFACKSISKKKLRAAVDIEDVRR EVEIMRHLPQHPNFVTLRDTYEDDTAVHLVMGLCEGGELFDRIVARGHYTERAAAIITRTIVEVVQICHKHGVMHRDLKPENFLFANKKETSPLMAIDFG LSVFFKPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQSIIRSIVDFKRDPWPIVSDNAKDLVTKMLNPDPKLRL TAQQVLDHPWLQNTKMAPNISLGDAVKARLMQFSALNKLKKRALRVIAEHLSTEEAKGIKEGFQVMDAGNKGKVNIDELKIGLQKLGHKLTEDDIQILME AGDVDGDGHLDYEEFVTIAVHLRKIGNDEHLRKAFEFFDRDKSGAIEIEELREALADEVSTNNEEVISAIIQDVDADKDGKISFDEFAAMMKAGTDWRKA SRQYSRERFTNLSMKLNKVGSLQVIED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	2.2	0.9876
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	3.2	0.9876
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	3.9	0.9876
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	4.5	0.9876
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	5.0	0.9876
					Lus10007779 [exp]	5.2	0.8479
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	6.0	0.9748
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	6.5	0.9700
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	7.3	0.9469
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	7.5	0.9600

Compare expression of checked genes

Lus10042370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.