Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 396 / 5e-135 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 387 / 1e-131 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 385 / 9e-131 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G80170 317 / 1e-103 Pectin lyase-like superfamily protein (.1) AT1G70500 291 / 2e-93 Pectin lyase-like superfamily protein (.1) AT1G23460 275 / 1e-87 Pectin lyase-like superfamily protein (.1) AT2G43890 261 / 5e-83 Pectin lyase-like superfamily protein (.1) AT3G15720 261 / 4e-82 Pectin lyase-like superfamily protein (.1.2) AT1G56710 256 / 2e-80 Pectin lyase-like superfamily protein (.1) AT4G18180 248 / 1e-77 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026299 [exp] 651 / 0 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 427 / 2e-146 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 409 / 1e-139 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 300 / 3e-97 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 275 / 5e-87 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 250 / 3e-78 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029139 [exp] 244 / 4e-76 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 241 / 3e-75 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 241 / 3e-75 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052700 [exp] 506 / 9e-178 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 468 / 4e-163 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.009G060400 [exp] 440 / 7e-152 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 331 / 2e-109 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 286 / 1e-91 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 283 / 2e-90 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 280 / 6e-89 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 267 / 1e-84 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 263 / 9e-83 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 261 / 2e-82 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10042371 pacid=23153514 polypeptide=Lus10042371 locus=Lus10042371.g ID=Lus10042371.BGIv1.0 annot-version=v1.0 ATGGTGATGTCTTCTCGACCATCACAATGGGCCACCATTTTCATCATATTCTTCATCGTCATCTCAATTACTCTTTCGTGCCATCATTGCTTTGCTGATC ATGTTTATAGTAATGATTATCCCACCATCGAACAAGCAATCCGAGACAGAACAGATGATCAGCAACTGGTGGACGATGGAAGGCCACCGTATCCTTCCTA CTTTGGCGTGGTCGATGATGCTCAATCCATGGACCCGGTTAAGCTTGCAACCGATATTCTGAGTTTCAAGGCAGCTGAAACCTCTTCCTCTTCTTCATCA TCAACCCGGAGACTTCAAGTTGAAGATTTTAGAGAGGACGGTGACGACGACACTAAGACACTGGAGAAAGCATGGGATGCAGCGTGCAAGTCGTCTGGGA AGGGAGCAGTGCACTTGGTTGTGCCGGCCAAGAAGAGCTACACACTCCGACCGATTAGGTTCTCCGGTCCATGCAAATCCAAACTGACGGTTGAGATTTC CGGAACCATCCAGGCATCCAATGACCGGTTGGATTACGAGGAGGACAGGAGCCACTGGCTTGTGTTCGATGGCGTCCAGAATTTGGCTGTCCAAGGTGAT GGCACCATTGATGGGCAGGGCAAAGTTTGGTGGCAAAACTCTTGCAAACCATGCAAGAAAGCACCAACGGCTGTAATATTTTACAAATGCAACAACTTGG TGGTGAAGAACCTAAGGATCCAAAACGCACAGCAAATGCACCTCTCCTTCCAAAGCTGCAACAACGTCCAAGCCTCCAACCTACACGTGACTTCCCCACA GGACAGCCCCAACACCGACGGAATCCACGTCACCGCCACCCAAAACATCAGAATCTCCAACGCCGTCATCGGAACAGGGGACGACTGCATCTCCATCGTC AGCGGCTCCAAGAACGTGGAAGCCGACAGCATCACCTGCGGCCCTGGACACGGCATCAGCATCGGAAGCCTCGGGTCCCACAGCTCAGAGGCTTACGTGT CAGGGGTCAGCGTCAACGGCGCCAAGTTCTCCGGAACATCCAACGGGCTGAGGATCAAGACGTGGCAGGGCGGGTCGGGCAGGGCTGCCAACATCAAGTT TCAAAATGTTGAGATGGACAATGTGGAGAACCCCATTATTATTGATCAGAGCTACTGCGATCAGGACAAACCCTGCAAACAACAGAAATCTGCAGTGCAG GTGAAAGACGTGGTGTACAAGAATATAAAAGGGACGAGTGCTTCGGAGGTGGCCATAAAGTTCGACTGCAGCAAGAGCTTCCCTTGCGAGGGAGTAGTGC TGCAAGATGTTCATCTAGAGAGGGGAGGCTCTGATGATGTGAAAAAAGCCACAGCTGTTTGCGACAATGTTAAGTTGACTGAAGTGGGAGCCGTTTCTCC AAGTTGTCAATGA
AA sequence Show only first row Show all	>Lus10042371 pacid=23153514 polypeptide=Lus10042371 locus=Lus10042371.g ID=Lus10042371.BGIv1.0 annot-version=v1.0 MVMSSRPSQWATIFIIFFIVISITLSCHHCFADHVYSNDYPTIEQAIRDRTDDQQLVDDGRPPYPSYFGVVDDAQSMDPVKLATDILSFKAAETSSSSSS STRRLQVEDFREDGDDDTKTLEKAWDAACKSSGKGAVHLVVPAKKSYTLRPIRFSGPCKSKLTVEISGTIQASNDRLDYEEDRSHWLVFDGVQNLAVQGD GTIDGQGKVWWQNSCKPCKKAPTAVIFYKCNNLVVKNLRIQNAQQMHLSFQSCNNVQASNLHVTSPQDSPNTDGIHVTATQNIRISNAVIGTGDDCISIV SGSKNVEADSITCGPGHGISIGSLGSHSSEAYVSGVSVNGAKFSGTSNGLRIKTWQGGSGRAANIKFQNVEMDNVENPIIIDQSYCDQDKPCKQQKSAVQ VKDVVYKNIKGTSASEVAIKFDCSKSFPCEGVVLQDVHLERGGSDDVKKATAVCDNVKLTEVGAVSPSCQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	1.4	0.9681
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	2.6	0.9406
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	3.0	0.9620
AT1G54520			unknown protein		Lus10006109 [exp]	3.9	0.9283
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	4.9	0.9593
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	5.3	0.9622
					Lus10001533 [exp]	6.0	0.9510
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	7.7	0.9351
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	9.5	0.9247
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	9.5	0.9559

Compare expression of checked genes

Lus10042371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.