Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41830 816 / 0 Uncharacterized protein (.1) AT5G21080 732 / 0 Uncharacterized protein (.1) AT1G05960 568 / 0 ARM repeat superfamily protein (.1.2) AT5G26850 436 / 2e-135 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026298 [exp] 1297 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10006583 [exp] 608 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001161 [exp] 605 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10029842 [exp] 450 / 2e-140 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 439 / 4e-136 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10019717 [exp] 367 / 5e-110 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10016400 [exp] 367 / 1e-109 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052100 [exp] 902 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 901 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 655 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.013G008500 [exp] 459 / 1e-143 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042372 pacid=23153978 polypeptide=Lus10042372 locus=Lus10042372.g ID=Lus10042372.BGIv1.0 annot-version=v1.0 ATGAGTGCTGTTTCTGCTGTTTTATCGCGCCAAGTATTGCCAGCGTGCGGTAGCCTTTGTTTCTTTTGCCCTGGATTGAGGGCCAGGTCCAGACAGCCTA TCAAGAGATACAAGAAGCTCATTAGTGACATCTTCCCCAAGAATCAGGAGGAAGCACCTAATGACAGGAAGATCTCTAAACTTTGTGAATATGCAGCTAA AAATCCTCTGCGCATACCAAAGATTGCAAACTCGCTTGAGCAAAGGTGTTACAAGGAGCTGAGATATGAGAATTTTCACTCTGTCCAGATTGTAATGTGC ATTTATAAAAAATTGCTGATCATTTGCAATGAACAAATGCCTTTGTTTGCTACTAGTTTAATGAGCATTATTCATACCCTACTCGAACAGACACGGAGAC AAGATTTGCAACTTACAGGATGTCAGTCTCTTTTTGACTTTGTAAATAATCAGAAAGATGGAACTTACGCATTTAATTTAGAAGGCTTCATACTGCAACT CTGTCAGTTAGCTCAAGAAGTAGGTGAAGATGAAAGAGCAGTTCATCTACGTGCAGCTGGTCTTCAGGCTCTTTCTTCAGTGGTTTGGTTTATGGGCGAA CATTCACATATTTCAGCGGAGTTTGACAATATTGTGTCAGTTGTTCTAGAAAATTATGGACATCCTAAGGATGCCCCTGATGATCTTGATGCTGACAAGC AAGATAGGCAGAATCAATGGGAACAAGAAGTGATAAATCAGGATCAGCAGCCTACTCCGTCTGAAACCCTTGCGAGGGTACCATCCTGGGGAACACTTGT AAAAGAAAGAGGAGAATTGAATGTCACAGAACAAGATGCCCGGAACCCGTGCTTTTGGGCTAGGATTTGCTTGCAGAACATGGCCAAGCTCGGACAGGAG GCTACAAACATTCGGCACATTCTGGAATCCTTATTTCGATACTTCGATAGTAGTGACCTATGGTCTCTTGACCATGGTTTTGCCCTTCCAGTATTGAATG ATATGCAAATTTTGATGGAAAAGTCTGGGTACAATTCACATGTTCTGCTGTCCATGTTGATTAAGCATCTGGATCACAAAACTGTCGTGAAAGACCCAAA CATGCAGCTAGACGTATTGAATGTTACCACCTCACTAGCTCAACAAGCAAAGATTGAGTCCTCTATAGAAATTATTGGTGCAGTGAGTGATCTCATAAGG CATTTAAGGAAGAGCATACATTGCTCAGTTGATGATGCAAACCTTGATGGAGGTAAGAGACGGAACAACAACTTACGAGAAGCAGTGGATAAATGCCTCG TGGGATTGTCAACTAAGGTGGTTGGAGATGCAGGCCCGATTCTTGAAATGATGGCTGTGGTACTGGAGAATCTTTCAACTGTTACAGTTATTGCAAGGAC AACAATTTCTTCTGTTTATCGGACCGCTCAGATAGTTGCATCATTGCCAGATTTGCATTATCAAAATAAGACATTTCCCGAGGCTTTATTTCATCAGCTG CTTCTGGTTATGGTCCATCCTGACCACGAGACAAGAGTTGGAGCTCATCGTATATTTTCTGTTGTTCTAGTCCCGTCTTCTTTTTGTCCTCGACCAAGTT CAACTTGTCTTGATATGAAGACACAAGCTGAAGTTGAGCGGCAACTCTCAAGAACAGTCTCCGTTTTTTCTTCATCGGCTGCCCTTTTTGAGAAGATAAA GAAGGAGAAAGGTTCCAGCAGGTCTGGAGGGAAAATGCAAAATGGGATGCTTGACAGATTGCGCTCATCTGCCAGTATGGAAAGCAATGTGCCCACATTT TCTGATGAAAAGACAGTGGCCAACCTAAATAAGGTGACAGAAGTCACTATTTTGAGGCTCAGCAGTCACCAAATTAGTCTCTTACTGACATCAATCTGGG CGCAGTCAATTTCTCCTGATAATGTGCCTGAAAACTATGAAGCAATCTCTAATACGTTTAGCCTGGTGCTATTATTTTCCCGGGGAAAGACATTTCCCGA GGCTTTATTTCATCAGCTGCTTCTGGTTATGGTCCATCCTGACCACGAGACAAGAGTTGGAGCTCATCGCATATTTTCTGTTGTTCTAGTGCCTTCTTCT GTTTGTCCTCGACCAATTTCAACTTGTCTTGATATGAAGACACAAGCTGAAGTTGAGCGGCAACTCTCAAGAACAGTCTCCGTTTTTTCTTCATCGGCTG CCCTTTTTGAGAAGATAAAGAAGGAGAAAGGTTCCAGCAGGTCTGGAGGGAAAATGCAAAATGGGATGCTTGACAGATTGCGGTCATCTGCCAGTATGGA AAGCAATGTCCCCACATTTTCTGATGAAAAGACAGTGGCCAACCTAAATAAGGTGACGGAAGTCACTATTTTGAGGCTCAGCAGTCACCAGATTAGTCTC TTACTGACATCAATCTGGGCGCAGTCAATTTCACCTGATAATGTGCCTGAAAATTATGAAGCAATCTCTAATACGTTTAGCCTGGTGCTATTATTTTCCC GTGGAAAGAATTCCAGTCATGAGGTTTTAGTACGCAGTTTTCAGCTTGCCTTCTCCTTGAGAAACATTGCTGTCAGTGATGAAGGTCTTCTACCTGCACC GTGTCGCAGGTCACTTTATACCTTGGCAAATGCGATGATTCTGTTTTCATCAAAGGCATATGGCATTGTTCCCCTAGTAGCATCTGCCAAGGCAGTACTC ACAGAAAAAATGATAGATCCATTCTTACATCTAGTTGAGGATCGCAAGCTAGAAGCTGTAAGTGGTGAAACTGCCAGCCACAAAGTTGCATTTGGATCTA AGGATGACGGTGACGTGGCTTCCAAAGCAATTTCATCTGTAAGCATCGCTGGGGAACAAAGCAGAGATTACTTTGCAGCGGAGATTGCGAAGAGCTTGTC AGAATCTGAAATGTCTATTGTCAAGAAGCAGCTCCTCGAAGAGTTCGTACCAGATGATGCTTGTCCATTGCCAGCTCCAACACGCAAGGGTACTGGTCAG AACACTGATGATCACGTTGTTGGTGCCAAGGAGCACAACCCGTTTCAGGAGAGTGAAGAAGCTTTTATAGAGTCATTGGAAGAAGGGCCAACCAATCAGA ACAATAAGCCAGCACTGGAGAGCCCTGATGTTCTGAGTGTTAATGAACTGATTGAATCTGCATTGGAGACAGCAAACCAAGTTGGAAGAATTTCAGTAAG CGCCACGCCAGAAGTTTCTTATAAGCAAATGGCCCTTCATTGTGAGCAACTCTTGATGGGAAAGCAGAAGAAGATGTCCAGCGTGATGACTCTGCACTTG GGACAGGGGAGCTTTCCTTTGGTTGACAACAACTCCAGTGCAATCCCAGAAAGGCCACCCATTCTCCCAGTTGCTTTGCAGTGTTCAACCGAGTATCAAA ATCAGGGCAACTCGTTTCGCCTACCGGCATCTAGTCCGTTCGACAACTTCCTAAAAGCTGCTGGATGCTGA
AA sequence Show only first row Show all	>Lus10042372 pacid=23153978 polypeptide=Lus10042372 locus=Lus10042372.g ID=Lus10042372.BGIv1.0 annot-version=v1.0 MSAVSAVLSRQVLPACGSLCFFCPGLRARSRQPIKRYKKLISDIFPKNQEEAPNDRKISKLCEYAAKNPLRIPKIANSLEQRCYKELRYENFHSVQIVMC IYKKLLIICNEQMPLFATSLMSIIHTLLEQTRRQDLQLTGCQSLFDFVNNQKDGTYAFNLEGFILQLCQLAQEVGEDERAVHLRAAGLQALSSVVWFMGE HSHISAEFDNIVSVVLENYGHPKDAPDDLDADKQDRQNQWEQEVINQDQQPTPSETLARVPSWGTLVKERGELNVTEQDARNPCFWARICLQNMAKLGQE ATNIRHILESLFRYFDSSDLWSLDHGFALPVLNDMQILMEKSGYNSHVLLSMLIKHLDHKTVVKDPNMQLDVLNVTTSLAQQAKIESSIEIIGAVSDLIR HLRKSIHCSVDDANLDGGKRRNNNLREAVDKCLVGLSTKVVGDAGPILEMMAVVLENLSTVTVIARTTISSVYRTAQIVASLPDLHYQNKTFPEALFHQL LLVMVHPDHETRVGAHRIFSVVLVPSSFCPRPSSTCLDMKTQAEVERQLSRTVSVFSSSAALFEKIKKEKGSSRSGGKMQNGMLDRLRSSASMESNVPTF SDEKTVANLNKVTEVTILRLSSHQISLLLTSIWAQSISPDNVPENYEAISNTFSLVLLFSRGKTFPEALFHQLLLVMVHPDHETRVGAHRIFSVVLVPSS VCPRPISTCLDMKTQAEVERQLSRTVSVFSSSAALFEKIKKEKGSSRSGGKMQNGMLDRLRSSASMESNVPTFSDEKTVANLNKVTEVTILRLSSHQISL LLTSIWAQSISPDNVPENYEAISNTFSLVLLFSRGKNSSHEVLVRSFQLAFSLRNIAVSDEGLLPAPCRRSLYTLANAMILFSSKAYGIVPLVASAKAVL TEKMIDPFLHLVEDRKLEAVSGETASHKVAFGSKDDGDVASKAISSVSIAGEQSRDYFAAEIAKSLSESEMSIVKKQLLEEFVPDDACPLPAPTRKGTGQ NTDDHVVGAKEHNPFQESEEAFIESLEEGPTNQNNKPALESPDVLSVNELIESALETANQVGRISVSATPEVSYKQMALHCEQLLMGKQKKMSSVMTLHL GQGSFPLVDNNSSAIPERPPILPVALQCSTEYQNQGNSFRLPASSPFDNFLKAAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	0	1
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	1.0	0.9035
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	2.0	0.8599
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	2.4	0.8630
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	4.5	0.8844
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	8.1	0.8448
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	9.4	0.8232
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	9.9	0.8314
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	10.7	0.8353
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	11.1	0.7447
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	11.7	0.8056

Compare expression of checked genes

Lus10042372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.