Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19840 100 / 8e-28 SAUR-like auxin-responsive protein family (.1) AT1G75590 100 / 1e-27 SAUR-like auxin-responsive protein family (.1) AT5G10990 98 / 9e-27 SAUR-like auxin-responsive protein family (.1) AT4G34750 92 / 1e-24 SAUR-like auxin-responsive protein family (.1.2) AT2G24400 69 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT4G34760 59 / 4e-12 SAUR-like auxin-responsive protein family (.1) AT4G31320 58 / 3e-11 SAUR-like auxin-responsive protein family (.1) AT1G76190 57 / 3e-11 SAUR-like auxin-responsive protein family (.1) AT1G56150 56 / 5e-11 SAUR-like auxin-responsive protein family (.1) AT1G79130 56 / 1e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026297 [exp] 184 / 7e-61 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 107 / 2e-30 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 104 / 3e-29 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10033161 [exp] 103 / 8e-29 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 100 / 1e-27 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10007552 [exp] 87 / 1e-22 AT1G75590 70 / 3e-16 SAUR-like auxin-responsive protein family (.1) Lus10024322 [exp] 68 / 2e-15 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 61 / 6e-12 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10017179 [exp] 57 / 3e-11 AT4G34750 89 / 6e-24 SAUR-like auxin-responsive protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125900 [exp] 116 / 3e-34 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 114 / 3e-33 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 103 / 5e-29 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 100 / 7e-28 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 67 / 9e-15 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 61 / 3e-12 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 59 / 1e-11 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 57 / 2e-11 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 57 / 3e-11 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 57 / 5e-11 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10042374 pacid=23153682 polypeptide=Lus10042374 locus=Lus10042374.g ID=Lus10042374.BGIv1.0 annot-version=v1.0 ATGTCAAAGTTGAACAAAATCCGCCACATCGTCAGAATCCAGCAGATGCTCAAGCACTGGCGCCACAAAGCCAGAGCCAATAAGTCCACCTTCTCGTCCT CCTCCTCCCATTCATCATCATCATCATCATCACCCGAAGTCCCCGCCGGACACGTGGCGGTCCACGTCGGAGCGAGCGGCCAGAGATTCGTTGTCCGAGC CAGGTACCTCAACCATCCGATTTTCCAGAGCATTCTCGCGCGGGCAGAGGAAGAGTACGGATTCAAGAACGACGGGCCGTTGCGGATCCCTTGCGAGGAG TGGGAGTTTGAGGAGATTCTCCGATTCGTGTCGAGATCGGATTCTAATAATAGTCGATGCTCTTGTTCTTGTAATCATCCGGAGCTAGTCGGCCCTCCTT CTGGGCGGCCTTTACTCCGTGGTTGA
AA sequence Show only first row Show all	>Lus10042374 pacid=23153682 polypeptide=Lus10042374 locus=Lus10042374.g ID=Lus10042374.BGIv1.0 annot-version=v1.0 MSKLNKIRHIVRIQQMLKHWRHKARANKSTFSSSSSHSSSSSSSPEVPAGHVAVHVGASGQRFVVRARYLNHPIFQSILARAEEEYGFKNDGPLRIPCEE WEFEEILRFVSRSDSNNSRCSCSCNHPELVGPPSGRPLLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10990			SAUR-like auxin-responsive pro...		Lus10042374 [exp]	0	1
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	1.0	0.8291
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	2.8	0.7935
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	4.0	0.7092
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	13.7	0.6909
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	17.0	0.7201
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	20.2	0.6986
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	25.3	0.6730
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	32.6	0.6828
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	34.3	0.6679
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	34.9	0.6132

Compare expression of checked genes

Lus10042374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.