Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73190 99 / 4e-24 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT3G54820 94 / 5e-22 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT3G61430 93 / 9e-22 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT2G45960 93 / 1e-21 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT4G35100 92 / 2e-21 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 91 / 5e-21 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 91 / 5e-21 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT2G37180 91 / 6e-21 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G16850 90 / 9e-21 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G23400 89 / 2e-20 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026295 [exp] 298 / 8e-103 AT3G61430 66 / 2e-13 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10042385 [exp] 171 / 1e-51 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10007568 [exp] 172 / 3e-51 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10018256 [exp] 103 / 7e-26 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10040652 [exp] 102 / 2e-25 AT1G17810 367 / 2e-129 beta-tonoplast intrinsic protein (.1) Lus10038324 [exp] 102 / 3e-25 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10036187 [exp] 101 / 5e-25 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10014840 [exp] 98 / 2e-23 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014978 [exp] 95 / 2e-22 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128100 [exp] 245 / 9e-81 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.004G167000 [exp] 178 / 5e-54 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128500 [exp] 173 / 6e-52 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128000 [exp] 170 / 9e-51 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128300 [exp] 167 / 3e-50 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G127900 [exp] 163 / 3e-48 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.017G154800 [exp] 101 / 3e-25 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1) Potri.018G152100 [exp] 97 / 2e-23 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1) Potri.010G191900 [exp] 94 / 5e-22 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 92 / 2e-21 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10042375 pacid=23153927 polypeptide=Lus10042375 locus=Lus10042375.g ID=Lus10042375.BGIv1.0 annot-version=v1.0 ATGGCCAAATTCCAAGATGTCAGACATGATGATGCTAATGGAAGCCTATCCATTCATCAGAATTCAATGGGTGCTGGCGCCAATACATCAACCAGCAGGC AGGATTTCATGCGCCGCATTGGTGCTCATGAACTTTCTACCAAGAGTATGTGGAGAGCGGCCGTGGCGGAGATGGTAGCTTCGGCGTGTCTGCTCTTCTC CCTCACAACAACAATAACCTCTTGCTTCAAATCCACTCCGCCAAATTTGGTCCTCATCCCGATTTTCATCTTCATATCCGCATTCCCAGTCCTTCTCGGA ACAATCCCAATCTCCGGCGGCCACATGAACCCTGTTTTCACCTTCGCCTTCGCCCTTAACGGCTCTGTCTCCGCCGTCCGCGCCGTCATTTACGTAATTG CTCAGCTCCTCGGCTCTTTAATCGCCTTCGCCGTCGTCAAGGGCACCATGGACACCGAATCCGCCGCCAAGTTCAATTTGGGGGGCTGCTTTGTCGACGC CCAAGGCGACGGATCCGGAGTCAATGCCGGAACAGCTCTGGTGGTGGAATTCTCGTGCACTTTCCTCGTGCTGTACGTCGCCGGAGCCGTGGCGTTTGAC CAGCGGCGGGGTGGTGGGTTGGGGGTGGACACGGTGGGGGGGGAGGTGAGCGCGATGGTCTCGGCTGCTTACGGATTGGCTGTTTACGCCTCGGTTACCG TTACGGGTCGGCCCGGGTATGGCGGGGTGGGGTTGAACCCGGCAAGGTGTTTAGGTTCGGCTTTGCTGGCTGGAGGCCCGTTGTGGGAAGCCCATTGGGT TTTTTGGTTGGGCCCGTTTTTGGCTTGTGTTGTTCACCATTTGGTTAGCTTGGCTCTCCGTGAAGATGAAGTTGTGAAGAAAGAAGATGATGAACATGAA GAGACTTCGGCATGTAATTTGTGA
AA sequence Show only first row Show all	>Lus10042375 pacid=23153927 polypeptide=Lus10042375 locus=Lus10042375.g ID=Lus10042375.BGIv1.0 annot-version=v1.0 MAKFQDVRHDDANGSLSIHQNSMGAGANTSTSRQDFMRRIGAHELSTKSMWRAAVAEMVASACLLFSLTTTITSCFKSTPPNLVLIPIFIFISAFPVLLG TIPISGGHMNPVFTFAFALNGSVSAVRAVIYVIAQLLGSLIAFAVVKGTMDTESAAKFNLGGCFVDAQGDGSGVNAGTALVVEFSCTFLVLYVAGAVAFD QRRGGGLGVDTVGGEVSAMVSAAYGLAVYASVTVTGRPGYGGVGLNPARCLGSALLAGGPLWEAHWVFWLGPFLACVVHHLVSLALREDEVVKKEDDEHE ETSACNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	0	1
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	1.7	0.9179
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	3.9	0.8526
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	6.0	0.8455
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	6.5	0.8653
					Lus10029097 [exp]	9.0	0.8037
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	12.0	0.8014
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	17.6	0.8351
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	24.8	0.7943
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	28.0	0.8050
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	30.4	0.8135

Compare expression of checked genes

Lus10042375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.