Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38810 462 / 6e-164 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026291 [exp] 638 / 0 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 539 / 0 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 528 / 0 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10015916 [exp] 80 / 2e-16 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1) Lus10009175 [exp] 74 / 1e-14 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G127800 [exp] 508 / 0 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.004G166900 [exp] 497 / 1e-177 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G052900 [exp] 71 / 2e-13 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.013G040500 [exp] 71 / 2e-13 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.002G218300 [exp] 42 / 0.0001 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 41 / 0.0002 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 41 / 0.0003 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 41 / 0.0003 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 41 / 0.0003 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218725 [exp] 40 / 0.0004 AT2G44310 135 / 1e-41 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042380 pacid=23153831 polypeptide=Lus10042380 locus=Lus10042380.g ID=Lus10042380.BGIv1.0 annot-version=v1.0 ATGAAGTTGGTTGGGAATGACAAAGTGTTTAGCACCTTCGTCGACCATAAGTTTACACAGCTTGATACAGACAGAGACGGCCACCTCTCCGTCAGAGAAC TCTGCCCTGCCGTCGCTGATATTGGCGCTGCCCTTGGCTTGCCTGCTCAAGGCTCTTCTTCCGACTCCGATCTCATCTATTCCGAGGTTTTGAACGAGTT CACCCATGGCAAGAAAGGTAAAGTGAGCAAGACTGTGTTTAAAGAGGTGCTTTCAGATATCCTGCTAGGCATGGCTGCGGGTTTGAAGAGAGATCCAGTG GTGATCCTGCGTATTGACGGAGAAGACTTGCTAGAGTTCATCAATGGGCCGGGTTATGAACCAGAGATGGTTTCTATCTTCTCAGAGTTGAATTCAGCTG ATGATGCCTCACTCCATGGTTACATGGTGAAAGCTTTCCAGAAACTTACAGTTAGTCATGGATTACCTCCAACTTCAGATTCTTGGGTAATGAACAACTT ACTAGAGCCGTCACTGCAATCAATTGCTGGAAAATATAACAACACACCGGTGTTTCAAGAGATTTTCTTAGAAACATTCAAGCAAGTATCGGAGTGTGTA GCTCAACATCTCAGAGAGCAACCTGTGATTGTAGCACATAGCGAGAACACTTTTGATGGAAGTGGCATCAGGAGACTTCTATCCAACAAGTTTGAACTAG ACAAGATGCTAAAATCGACTCTAGAAAATTTGCCAAGGGATCGGAGCGGGAAGATATCAAAAGAGTACTTGAGCATGGTCCTTGATTCAGTTGCTCCTTC TGCTGGTCTACCTCCTATTGGTGCAATCGAAGAGATGGATCGGGTTATGATGGAAGCATTCAAGATGGTGGATGCAGATGATAGGAAGCAGGAGGTAAAG GGGGATGAGTTCGGGAAGATGGTGGTTGAGATCTTGGGAAGTATAATGCTGCAGTTAGAAGGAAATCCAATTTCAATCTCTTCAAACTCTATTGTCCATG AACCCCTTGAATCTGCATCCACACTTTTGCAGACATCTTCCTAG
AA sequence Show only first row Show all	>Lus10042380 pacid=23153831 polypeptide=Lus10042380 locus=Lus10042380.g ID=Lus10042380.BGIv1.0 annot-version=v1.0 MKLVGNDKVFSTFVDHKFTQLDTDRDGHLSVRELCPAVADIGAALGLPAQGSSSDSDLIYSEVLNEFTHGKKGKVSKTVFKEVLSDILLGMAAGLKRDPV VILRIDGEDLLEFINGPGYEPEMVSIFSELNSADDASLHGYMVKAFQKLTVSHGLPPTSDSWVMNNLLEPSLQSIAGKYNNTPVFQEIFLETFKQVSECV AQHLREQPVIVAHSENTFDGSGIRRLLSNKFELDKMLKSTLENLPRDRSGKISKEYLSMVLDSVAPSAGLPPIGAIEEMDRVMMEAFKMVDADDRKQEVK GDEFGKMVVEILGSIMLQLEGNPISISSNSIVHEPLESASTLLQTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38810			Calcium-binding EF-hand family...		Lus10042380 [exp]	0	1
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	4.2	0.7723
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	8.3	0.7592
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	10.6	0.7653
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	11.5	0.7500
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	15.7	0.7400
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	17.0	0.7392
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	28.3	0.7318
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	30.4	0.7341
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	38.5	0.6893
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	40.4	0.7007

Compare expression of checked genes

Lus10042380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.