Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25470 246 / 5e-68 AtRLP21 receptor like protein 21 (.1) AT1G74190 241 / 2e-66 AtRLP15 receptor like protein 15 (.1) AT3G53240 236 / 4e-65 AtRLP45 receptor like protein 45 (.1) AT1G74170 235 / 5e-64 AtRLP13 receptor like protein 13 (.1) AT5G49290 234 / 5e-64 ATRLP56 receptor like protein 56 (.1) AT1G58190 228 / 5e-62 AtRLP9 receptor like protein 9 (.1.2) AT1G07390 209 / 1e-55 AtRLP1 receptor like protein 1 (.1.2.3) AT1G54470 186 / 2e-48 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74180 186 / 4e-48 AtRLP14 receptor like protein 14 (.1) AT1G47890 171 / 3e-43 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027856 [exp] 1143 / 0 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 371 / 2e-113 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10029288 [exp] 298 / 7e-94 AT1G07390 129 / 8e-34 receptor like protein 1 (.1.2.3) Lus10039531 [exp] 195 / 7e-51 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 191 / 1e-49 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 182 / 9e-47 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 181 / 2e-46 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 178 / 1e-45 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 177 / 3e-45 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061300 [exp] 468 / 3e-149 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.018G145512 [exp] 447 / 3e-141 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.018G144300 [exp] 436 / 5e-137 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.001G065300 [exp] 434 / 7e-137 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2) Potri.006G061000 [exp] 434 / 2e-136 AT1G74190 286 / 4e-82 receptor like protein 15 (.1) Potri.018G145516 [exp] 431 / 6e-135 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.018G117927 [exp] 433 / 1e-134 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 427 / 1e-133 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.001G065327 [exp] 422 / 6e-132 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G144700 [exp] 419 / 2e-130 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10042381 pacid=23153641 polypeptide=Lus10042381 locus=Lus10042381.g ID=Lus10042381.BGIv1.0 annot-version=v1.0 ATGTGGGCGATGATGATGGTCTTAACACTGACCGTGGGTTGTGAGGGTTGTGAGGAGGGTGAGAGAATCGGTCTTCTTGATATCAGTGCCTACTTTCAAA AATATTCTGTTTTGAAGTTGTCTTGGGGTCCGAAATCAGCAAGTTTCGACGATTGTTGTGATTGGAGAGGAGTCGGGTGTGATTTCATCACTAAGAGAGT AACTTCTATCTCGATCAATAGATTCCTGTATTATACTACTAATTTGCATCTTCGTTATGGCGTTATTGTTTATGCCGGAGACACTACAAATTTCCGTATG AATGCTTCTCTGCTCTTGCCTTTTCAAGAATTAGTCAATCTTTCACTAAACGATGTTCGTATGGTCGGTTGCCTCGAAAATGAAGGATTTGACAAGTTAT CAACCCTCGTTAATTTGGAATGTTTGGATCTAAGTTACAATATGATAGACAATAGTATATTGTCATCATTAAGTACTCTTTCATCGTTGAAACATTTAGA CCTCTGTAAGAATAGCTTCACAACGCAAGTTAAAGGTTTTGAAGGATTGTCAAACCTTAGAAATTTGGAGTACCTGAATTTAGGGAGTAATGACTTGGGG AACAACATTCTGCCATATCTAAATGGCATATCCACTTTAAAATCCCTGAGGCTGTACAATACAAGTCTAAATGGAACAATCCATGTCCAAGGAGTTTTGA GGCAATTAGAGGCAATTCATTTAGGCGCAAACGATGTTTTATTGAAAGGGTTGGTGATGTTTACCAATATGAAAGAACTCAGAGTTGAAGCTGCTAGTCT TTGCGAATCTCAAGAGATTCTTTCGATGACGGAGTTGGATGAGATATGGTTGTTTCGATTTTCCATGTCTGAACATATTATGTTACTTCAAGATCTAACA ACAATCTCTTCCTTAAAAGTTTTGGTGTTCTCCAATTCAGATCTCCATTCTAAAGGATGGCCATTTGGATTCAAGAAGTTGGAAAATCTAACAATTTATG ATTCAACCATAAATGATGACTTTCTTGACACAATTGGCACCACAATGACCAATCTCAAGAATTTGATAATTACAAATTCGCCCCTCCAATCAACTATTTC TCAAGGTTTGTGCAACTTGAAAAATCTCCAAGTACTGAAGCTCCAACAAAATTGTCTCATTGGAGAGCTGCCACAGTGTCTATCGAACTTGACTTCACTT GGAGAGATTTACATTTCCGATAATGGATTACAAGGAAATATCTCTGAGTCTCCCCTTACCAAGCTATTCTCCCTGGAAACCATTGACATATCCCAAAATA AATTCAGAATCCCACTCTCACTCTCCCCCTTCTTCAATCATTCTCGTCTGCAATCGTTCTATGGGCTTGGAAATCAAGAGATATATGGAGACAACAACCA ATGGATGGAACATCAACCATTAGTTTTCCCACAGTTTCAGCTGAAACAATTGCTCTTATCTTCAAGACATAATGATGATGCAGGTGGATATGTTGGGCCA TTTCCCAGATTCCTTCGTTATCAAACTAACTTGGAAGCACTTTATATAAGAGACACCAAACTGGAAGTAGATGCATTCCCATGGTGGTTAATGGACAACA ACACCAACTTGGAAGCGCTTTGTTTAGTCAACTGTTCACTTTCATCATCTCTTCAGCTGCCAGATTATCTTCATCATCCTCATGGAAAACTGGGCATCTT AGATATAAGTGGTAACAACATCCATGGTACGATTCCACCGCATATTTGCACAGCCTTTCCAAGATTGTTCCGGTTATATCTCTGTGGTAATAAGCTAACT GGTAGAGTACCTGAACAGTTATCAAATTGCTCTTTCTTAGAAATCTTAGATGTCAGTGACAACAATCTTTCTGGTGAGATCCCGATACAAATTTGGGATA CGCCTCGACTTCATTATATAAACTTATCGAGCAATAAACTTTCGGGGGGTTTATCATCAACATTTATCTCTCCGTGGATATTTGAAGTTCATTTGTCTAG AAATCGACTTACAGGAGCCTTACCACCGACTGTAGATCAAGGATCATTGTCCACTGGAGACTATAAATTACAGGTTCTGGATCTTAGCAACAACCGTTTC AGTGGTACTATACCCAAGTGGATCGCTGGCTTGCCTCAGTTGAGTTATCTGTTACTGAAGAACAATGAGTTTTCAGGTGAATTTGCGATGGCTTTTTGTT TTCAGCGATTCAAGATGATTGATGTTTCACACAACTATCTTTCATCTCATCTTGCCTCTGCATTCAAGTCCACTAATAACTGCAGTTATGAAATGCTTAA TGTACAACCTTGGCTTGGTTTGGATTTCATTACCAAGAGGCAAGTTTACACTTATCGTGGCAAACCACTTCAATTAATGCATGGGATAGATTTCTCAAGC AACAAGTTCATAGGAGGGATCCCTCCTCAAATTGGCCTCAAGTTGAGATATATTAATTTCCTCAACTTATCGCACAACAAGCTTGAAGGACGAATTCCAT TTTCGTTTTCAAAGATGCACGATGTTGAAAGTTTGGATCTTTCTCACAACAATTTACATGGAAGGATTCCCCCTCAACTCACTAAGCTAACCTCCCTTGC ATTTTTCGACGTTTCATACAACAATCTGTCAGGAAAGTGTCCTAAAGGAACTGCACAGTTCAACACATTTAATGAAAATAGCTATCGAGGGAATCCCTTC CTGTGTTGTACTTTCTCAGCTGAAACAAAAGGGCCAGTGTTACTACCAACAAATTCTTACCGTGAAGATGACGATAAAGATGGAAGATTTATTGACATGG AGGCGTTCTATGCAAGCGGTGGAGTGACATATATTATGACATTACTGATAATTGCTAGTGTTTTGTCTATAAATCCTCGTTGGAGACAAATATGGTTTTA TTACGTTAAGATCATCACATGGAGTAGTTATTATTTTGTGGTAGACAATCTCCCCCTACCTGCCAAATATAAGATGTGGGAACTTCAGGTGTAG
AA sequence Show only first row Show all	>Lus10042381 pacid=23153641 polypeptide=Lus10042381 locus=Lus10042381.g ID=Lus10042381.BGIv1.0 annot-version=v1.0 MWAMMMVLTLTVGCEGCEEGERIGLLDISAYFQKYSVLKLSWGPKSASFDDCCDWRGVGCDFITKRVTSISINRFLYYTTNLHLRYGVIVYAGDTTNFRM NASLLLPFQELVNLSLNDVRMVGCLENEGFDKLSTLVNLECLDLSYNMIDNSILSSLSTLSSLKHLDLCKNSFTTQVKGFEGLSNLRNLEYLNLGSNDLG NNILPYLNGISTLKSLRLYNTSLNGTIHVQGVLRQLEAIHLGANDVLLKGLVMFTNMKELRVEAASLCESQEILSMTELDEIWLFRFSMSEHIMLLQDLT TISSLKVLVFSNSDLHSKGWPFGFKKLENLTIYDSTINDDFLDTIGTTMTNLKNLIITNSPLQSTISQGLCNLKNLQVLKLQQNCLIGELPQCLSNLTSL GEIYISDNGLQGNISESPLTKLFSLETIDISQNKFRIPLSLSPFFNHSRLQSFYGLGNQEIYGDNNQWMEHQPLVFPQFQLKQLLLSSRHNDDAGGYVGP FPRFLRYQTNLEALYIRDTKLEVDAFPWWLMDNNTNLEALCLVNCSLSSSLQLPDYLHHPHGKLGILDISGNNIHGTIPPHICTAFPRLFRLYLCGNKLT GRVPEQLSNCSFLEILDVSDNNLSGEIPIQIWDTPRLHYINLSSNKLSGGLSSTFISPWIFEVHLSRNRLTGALPPTVDQGSLSTGDYKLQVLDLSNNRF SGTIPKWIAGLPQLSYLLLKNNEFSGEFAMAFCFQRFKMIDVSHNYLSSHLASAFKSTNNCSYEMLNVQPWLGLDFITKRQVYTYRGKPLQLMHGIDFSS NKFIGGIPPQIGLKLRYINFLNLSHNKLEGRIPFSFSKMHDVESLDLSHNNLHGRIPPQLTKLTSLAFFDVSYNNLSGKCPKGTAQFNTFNENSYRGNPF LCCTFSAETKGPVLLPTNSYREDDDKDGRFIDMEAFYASGGVTYIMTLLIIASVLSINPRWRQIWFYYVKIITWSSYYFVVDNLPLPAKYKMWELQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Lus10042381 [exp]	0	1
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	8.7	0.8894
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	9.2	0.8763
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	9.4	0.8789
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	9.8	0.8821
AT2G05310			unknown protein		Lus10001175 [exp]	12.1	0.8823
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	13.0	0.8655
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	17.7	0.8760
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	20.2	0.8608
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	23.7	0.8567
AT5G02440			unknown protein		Lus10024400 [exp]	29.4	0.8407

Compare expression of checked genes

Lus10042381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.