Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 187 / 8e-56 FAD-binding Berberine family protein (.1) AT4G20840 174 / 1e-50 FAD-binding Berberine family protein (.1) AT5G44440 174 / 1e-50 FAD-binding Berberine family protein (.1) AT5G44390 172 / 5e-50 FAD-binding Berberine family protein (.1) AT5G44380 172 / 5e-50 FAD-binding Berberine family protein (.1) AT5G44410 172 / 1e-49 FAD-binding Berberine family protein (.1) AT1G30760 170 / 4e-49 FAD-binding Berberine family protein (.1) AT5G44400 170 / 5e-49 FAD-binding Berberine family protein (.1) AT5G44360 169 / 1e-48 FAD-binding Berberine family protein (.1) AT1G30710 165 / 3e-47 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026290 [exp] 352 / 1e-119 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10041290 [exp] 233 / 6e-74 AT2G34790 375 / 8e-126 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 226 / 3e-70 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 190 / 2e-56 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 176 / 2e-51 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 176 / 2e-51 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 175 / 7e-51 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 174 / 1e-50 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 174 / 1e-50 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161800 [exp] 230 / 4e-72 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 199 / 6e-60 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 197 / 2e-59 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 197 / 3e-59 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 196 / 4e-59 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 196 / 6e-59 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 195 / 1e-58 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 193 / 7e-58 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 192 / 1e-57 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 192 / 1e-57 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10042382 pacid=23153543 polypeptide=Lus10042382 locus=Lus10042382.g ID=Lus10042382.BGIv1.0 annot-version=v1.0 ATGAAGGAGATGAGGGTATTCCTCGCCTCATTGGCTCTGATGATCATCATTTCAATTTCACCGTCGACGAGCTCAATTCAAGTTGGTGATAATTTCATGG ATTGCATTTCAAACAACGGCTCCTCGTCGTCGTCAGGCTGGGTTTACGATCCAGAATCACCCCACTTCTCGTCAATTCTGGACTCCAAAATCCAGAACAA GAGATACTTGACATCAACTTCAAAACCTAACCTAATCTTGACTCCGTCCCACCATTGCCAAATCCAAGCAGCAATACTCTGCGCCAAACAACAGTCGCTC CACATCCGAGTCCGTAGCGGCTGCCACGACTACAAAGGCCTCTCTTACCTCACCCGCGGCCAAAAACCTTACATCATGATCGACCTCGTCAACCTCAACG CCGTGCATTGGTTCCCGGCAGGAGCCTGCCCCACGATTGGCGTCGGCGGACACCTCGACGGCGGAGGATACGGAATCTTGGTTAGAAAGCACGGGATGGC TACCGACAACGTCATCGATGATTACCTTGTGGATGCTCGCGGCAGAGTTCTTGAAAGGGAAGCTATGGGGGAGGATGTTTTCTGGGCGATTCGAGGCGGA GGAGCTTCTAGCTTCGGGATCGTCATTTCGTGGAAGGTGAAATTGGCGAGAGTTCCTCCGAAATTAACATTCTTCACAGTGAATAAGATGCTGGAGGAGG AAGGAGCGGTTAAGCTCGTCGATAAATGGCAGCGGTTTTGCACACGACGCACGAGAGGATTTCTTCGTCAGGATTCTAATTCTTGGGGGCTCAAGCAAGC TTCCAGACATTGTTTATGGGATCGATTGACGAGCTAA
AA sequence Show only first row Show all	>Lus10042382 pacid=23153543 polypeptide=Lus10042382 locus=Lus10042382.g ID=Lus10042382.BGIv1.0 annot-version=v1.0 MKEMRVFLASLALMIIISISPSTSSIQVGDNFMDCISNNGSSSSSGWVYDPESPHFSSILDSKIQNKRYLTSTSKPNLILTPSHHCQIQAAILCAKQQSL HIRVRSGCHDYKGLSYLTRGQKPYIMIDLVNLNAVHWFPAGACPTIGVGGHLDGGGYGILVRKHGMATDNVIDDYLVDARGRVLEREAMGEDVFWAIRGG GASSFGIVISWKVKLARVPPKLTFFTVNKMLEEEGAVKLVDKWQRFCTRRTRGFLRQDSNSWGLKQASRHCLWDRLTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	0	1
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	2.8	0.9724
					Lus10009892 [exp]	4.5	0.9717
					Lus10019151 [exp]	5.5	0.9678
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	6.3	0.9653
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	7.4	0.9628
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	7.7	0.9613
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	9.4	0.9497
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	9.5	0.9574
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	10.5	0.9442
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	11.0	0.9442

Compare expression of checked genes

Lus10042382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.