Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44410 134 / 6e-38 FAD-binding Berberine family protein (.1) AT4G20860 130 / 2e-36 FAD-binding Berberine family protein (.1) AT5G44360 127 / 3e-35 FAD-binding Berberine family protein (.1) AT5G44400 125 / 1e-34 FAD-binding Berberine family protein (.1) AT2G34790 124 / 3e-34 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44380 123 / 5e-34 FAD-binding Berberine family protein (.1) AT5G44440 122 / 1e-33 FAD-binding Berberine family protein (.1) AT5G44390 122 / 2e-33 FAD-binding Berberine family protein (.1) AT1G30760 121 / 4e-33 FAD-binding Berberine family protein (.1) AT4G20820 117 / 8e-32 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026290 [exp] 242 / 4e-79 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 159 / 5e-47 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 139 / 8e-40 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 138 / 4e-39 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 134 / 6e-38 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 133 / 2e-37 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 132 / 5e-37 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10033516 [exp] 131 / 1e-36 AT2G34790 451 / 1e-153 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023369 [exp] 121 / 2e-36 AT1G30710 156 / 4e-46 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162884 [exp] 150 / 5e-44 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 150 / 5e-44 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 149 / 1e-43 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 148 / 2e-43 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158600 [exp] 148 / 3e-43 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 147 / 8e-43 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 147 / 9e-43 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 145 / 3e-42 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 145 / 3e-42 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 145 / 3e-42 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10042383 pacid=23153466 polypeptide=Lus10042383 locus=Lus10042383.g ID=Lus10042383.BGIv1.0 annot-version=v1.0 ATGAACGAGATTTCAGAATCGTACACGCCGTTCCCGAACAGGAAAGGGCATCTTTACATCATTGAGTACATTGCGAGGTGGGGGCATAAGGAGGAAGAGG AGAGGCACCTTGAATGGATGAAGAAGCTTTACGACTACATGGAACCATATGTTTCGAAGTCCTTGAGGAGGGCGTATTTGAATTACAGGGATCTGGACAT TGGGACCAACAATCTTGACACGACCATGACGACAAGCTTCTCGGAGGCGAGTGTGTGGGGAAGGAAGTACTTCAGGGACAATTTTGAGAAGTTGTGTAAG GTAAAGAGTATGATCGATCCTGAAGATTTCTTTAGCGATGAACAGAGCATTCCTCAGTTTAGTGTTTATCTAAGGGACAATTAG
AA sequence Show only first row Show all	>Lus10042383 pacid=23153466 polypeptide=Lus10042383 locus=Lus10042383.g ID=Lus10042383.BGIv1.0 annot-version=v1.0 MNEISESYTPFPNRKGHLYIIEYIARWGHKEEEERHLEWMKKLYDYMEPYVSKSLRRAYLNYRDLDIGTNNLDTTMTTSFSEASVWGRKYFRDNFEKLCK VKSMIDPEDFFSDEQSIPQFSVYLRDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10037796 [exp]	2.4	0.6602
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10021448 [exp]	4.5	0.7172
					Lus10011218 [exp]	9.6	0.6585
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10028009 [exp]	10.2	0.6189
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	11.4	0.6380
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	11.5	0.6447
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	14.3	0.6370
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	16.4	0.6106
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	23.9	0.5860
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	25.0	0.5860

Compare expression of checked genes

Lus10042383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.