Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17810 67 / 6e-13 BETA-TIP beta-tonoplast intrinsic protein (.1) AT1G73190 61 / 6e-11 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT3G61430 61 / 7e-11 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G00430 61 / 1e-10 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT4G23400 60 / 3e-10 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT1G01620 59 / 4e-10 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT2G45960 59 / 5e-10 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT3G26520 58 / 9e-10 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT2G16850 58 / 1e-09 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT3G16240 57 / 2e-09 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007568 [exp] 258 / 1e-85 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042375 [exp] 139 / 3e-39 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10040652 [exp] 66 / 2e-12 AT1G17810 367 / 2e-129 beta-tonoplast intrinsic protein (.1) Lus10018256 [exp] 66 / 2e-12 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10036187 [exp] 62 / 4e-11 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10038324 [exp] 62 / 4e-11 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10039222 [exp] 60 / 3e-10 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 59 / 5e-10 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10014978 [exp] 58 / 1e-09 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128500 [exp] 303 / 2e-103 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128300 [exp] 284 / 2e-96 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.004G167000 [exp] 285 / 3e-96 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128000 [exp] 283 / 1e-95 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G127900 [exp] 275 / 2e-92 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128100 [exp] 163 / 3e-49 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.018G152100 [exp] 64 / 7e-12 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1) Potri.003G128600 [exp] 62 / 5e-11 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 61 / 1e-10 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 59 / 4e-10 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10042385 pacid=23153929 polypeptide=Lus10042385 locus=Lus10042385.g ID=Lus10042385.BGIv1.0 annot-version=v1.0 ATGGCTGGAAATGGGATTGAAGATGAAGAAAGTGGAGGCGGCTATGGCGGAAACAGAGTATGGCGAGCATCAGTTGCTGAGCTGGTGGGAACCGCGGTAC TAGTCTTCGCAATGGACACAATCGCCATTTCCTCGTACGAGACCAAGACGTCGACCCCTAACTTGGTGATGTCGATCCTAATCGCTGTCATTGTGACCCT TATTCTCCTGGCAACTTTCCCAGTCTCCGGTGGCCACATCAACCCAGTCATCACCATCGCCGCTATGCTTACTGGCCTCGTCACCGTTTCTCGGGCAGCC ATCTACATTGCGGCTCAATGTGCGGGCGCCATACTGGGCGCCCTGGCATTGAAAGCCGTGGTTAGTAGCACCATCGAACAGACATTTTCGCTCGGAGGCT GTACTCTAAACGTCGTCGTGCCCGGCCCACAGGGACCCGTTGTCATTGGGCTCGAAACCAAGCAGGCCCTTTGGATGGAGATACTATGCACCTTCTTGTT TCTGTTCGTCGCCATTTGGGTAGCCTTCGACGGCAGGCAGTTTAGAAGATTGGGCCGGGTAGTGGTGTTCTGCATAATTGGGCTTATGGTGGGCCTCATT GTCTTTATTTCGACGACGCTTACTGGAACCAAGGGTTATGCTGGGGTTGGGATGAACCCAGCAAGATGTTTGGGCCCAGCGATTGTGAGAGGAGGCCATC TGTGGACTGGACATTGGATATTTTGGGCCGGACCGGGTATTGCTTGCGTGGCTTTTGCTATCTACGCAAAAATCATCCCCAAGGAAAATCTATTCGGGTA G
AA sequence Show only first row Show all	>Lus10042385 pacid=23153929 polypeptide=Lus10042385 locus=Lus10042385.g ID=Lus10042385.BGIv1.0 annot-version=v1.0 MAGNGIEDEESGGGYGGNRVWRASVAELVGTAVLVFAMDTIAISSYETKTSTPNLVMSILIAVIVTLILLATFPVSGGHINPVITIAAMLTGLVTVSRAA IYIAAQCAGAILGALALKAVVSSTIEQTFSLGGCTLNVVVPGPQGPVVIGLETKQALWMEILCTFLFLFVAIWVAFDGRQFRRLGRVVVFCIIGLMVGLI VFISTTLTGTKGYAGVGMNPARCLGPAIVRGGHLWTGHWIFWAGPGIACVAFAIYAKIIPKENLFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	0	1
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	1.0	0.9762
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	2.0	0.9120
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	2.4	0.9316
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	3.0	0.8884
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	4.6	0.9131
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	4.9	0.9014
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	6.5	0.8971
AT2G21960			unknown protein		Lus10006822 [exp]	6.8	0.8633
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	7.7	0.9064
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	8.8	0.8816

Compare expression of checked genes

Lus10042385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.