Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29810 347 / 6e-117 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 342 / 1e-114 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 339 / 1e-113 COBL1 COBRA-like protein 1 precursor (.1) AT5G15630 332 / 5e-111 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 289 / 6e-94 COBL6 COBRA-like protein 6 precursor (.1) AT4G16120 125 / 2e-31 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G20580 122 / 3e-30 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 117 / 2e-28 COBL11 COBRA-like protein 11 precursor (.1) AT5G49270 117 / 2e-28 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 105 / 3e-24 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026288 [exp] 735 / 0 AT3G29810 374 / 9e-127 COBRA-like protein 2 precursor (.1) Lus10012598 [exp] 336 / 2e-112 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10021144 [exp] 336 / 4e-112 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 336 / 4e-112 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 333 / 3e-111 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 332 / 1e-110 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 331 / 2e-110 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 330 / 4e-110 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 329 / 2e-109 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167100 [exp] 452 / 6e-158 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.004G117100 [exp] 340 / 1e-113 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 339 / 1e-113 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 332 / 3e-111 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 328 / 2e-109 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 326 / 1e-108 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 325 / 4e-108 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 306 / 4e-101 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 306 / 6e-101 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.017G098600 [exp] 293 / 5e-96 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10042386 pacid=23153778 polypeptide=Lus10042386 locus=Lus10042386.g ID=Lus10042386.BGIv1.0 annot-version=v1.0 ATGAAATATGTGCAGGCAAGGGTGACGATCAACAACTTCTACCAGTACCGCCACGTGGAGAAGCCCGGGTGGCAGATTGGGTGGGGTTGGGGGAACGGAG AGATAATCCTGAAGATTGCAGGTGCGTATGCAACTGATTCAGGGGACTGCAAAAACTTTGCCGCTCTGAAACCACACTGCTGCAAGCAAAACCCTATCAT AGCCGACCTGTGGCCCGGCGGCGCATCTACACAAGGAACCAACGAAGTCGAGGGATGCTGCAAAAGCGGTGTGATCTCCGCTTGGGCGATCGATCCGTCC CAGTCGTCCTCGGCTTTCGAGATCACTGTCGGGAACCTCCCGCCGAATTCCAGCCACCCGCCGGCGAACCTCACTCTGTTTGTTCCGGGCCTTGGATATA CTTGCGGCCCTGTTCAGGATTCGGATCCCACTGTGTTTCTTGATTACGGTGGCAGGAGAAAGATTCGAGCTTTCCGGACGATGAAATCAGTATGCACATA CTCAAGTTTCTTGGCGAATAGAGCGCCTACTTGCTGTGTTTCCCTCTCAACATTCTACAGCCCTGAGATCACCAATTGTCCTAAATGTAGTTGTGGTTGC AGAGACTCTGCCTCTGATGGAATTTCCTGTTCAAGCCAGAGCTCTGCTTCGTACAATGGAAATTCCGTGGACAAGTTACAGTGTACAGACCACATGTGCC CGGTTCGAGTTCATTGGCATGTAAAGAACAGTTACACAAAGTATTGGAGGGTGAAGCTCACAATTTCGAACTACAATCTCCAGAAGAACTACTCCGACTG GAATGCTGTGATCCAACATCCTGGTTTCCGTAAGAAAGCAATCACTTACAGCTTCAACAGCACTACCCTCCCCACTGTCGGCATTGAAGACGAGGTTGTT CTGTTCTGGGGATTGGCATACTACAACAGTGAATTAACGGAAGCTAACGATTTCGAGATGGGGTCAGTGACGACAGACATCATCCTAGAGAAGGATTCAG ATTCATTCACGTTAAGTAACGGATGGGCACTGCCTAGAAGAGTGTTTTTTGGAGGAGAGGAATGCCAAATGCCGCTTCCTGACTCATATCCTATGCTGCC AAACGGTGCCACGTCGTTACAACATCAGTACTCTGTTTTGTATCTGCTATTGATGATGATGATGATGGTTTTGGCAGAACTTAGACCGTGGATTTGA
AA sequence Show only first row Show all	>Lus10042386 pacid=23153778 polypeptide=Lus10042386 locus=Lus10042386.g ID=Lus10042386.BGIv1.0 annot-version=v1.0 MKYVQARVTINNFYQYRHVEKPGWQIGWGWGNGEIILKIAGAYATDSGDCKNFAALKPHCCKQNPIIADLWPGGASTQGTNEVEGCCKSGVISAWAIDPS QSSSAFEITVGNLPPNSSHPPANLTLFVPGLGYTCGPVQDSDPTVFLDYGGRRKIRAFRTMKSVCTYSSFLANRAPTCCVSLSTFYSPEITNCPKCSCGC RDSASDGISCSSQSSASYNGNSVDKLQCTDHMCPVRVHWHVKNSYTKYWRVKLTISNYNLQKNYSDWNAVIQHPGFRKKAITYSFNSTTLPTVGIEDEVV LFWGLAYYNSELTEANDFEMGSVTTDIILEKDSDSFTLSNGWALPRRVFFGGEECQMPLPDSYPMLPNGATSLQHQYSVLYLLLMMMMMVLAELRPWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	2.4	0.9538
					Lus10007097 [exp]	3.2	0.9362
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	5.5	0.9456
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	5.5	0.9404
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10038939 [exp]	7.1	0.8939
AT1G76590			PLATZ transcription factor fam...		Lus10014396 [exp]	8.0	0.8873
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	9.2	0.9394
AT1G16510			SAUR-like auxin-responsive pro...		Lus10018269 [exp]	10.0	0.9013
					Lus10017966 [exp]	11.3	0.9071
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	11.8	0.9184

Compare expression of checked genes

Lus10042386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.