Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34840 311 / 8e-107 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1) AT4G38800 308 / 2e-105 ATMTN1, ATMTAN1 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026287 [exp] 452 / 2e-162 AT4G34840 356 / 3e-125 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128700 [exp] 386 / 2e-136 AT4G38800 387 / 4e-137 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1) Potri.004G167200 [exp] 380 / 8e-134 AT4G38800 368 / 1e-129 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF01048 [flax] [poplar] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10042387 pacid=23153683 polypeptide=Lus10042387 locus=Lus10042387.g ID=Lus10042387.BGIv1.0 annot-version=v1.0 ATGGGTCCTCCGCACGGCGGCGGATCAGCCGTCGCTGCTTCAATTGACCAGCAGCAACCGCGTCCAATTTCTTCCATCCTCATAATCATCGCTATGCAAA CGGAAGCCCTGCCTTTAGTCAACAAGTTCCAGCTAAAGGAAGACCTTGAGTCTGTGTTTCCTAAAGGAGCCCCCTGGGTCAGGTACTCTGGTACATACAA GGATCTCGAAATCAATTTAGTGTGGCCTGGGAAAGACACAACTCTGGGCGTTGACTGTGTTGGCACAGTTTCGGCTGCTCTTGTTACCTATGCTGCAATC CAAGCATTGAAGCCTGACTTAATTATCAATGCTGGAACAGCAGGCGGGTTTAAGGCGAAAGGAGCTGGTGTTGGTGATGTCTATCTGGTGTGTGATGTTG CTTTTCATGATAGGAGAATCCCCATTCCTGTTTTTGATCTCTATGGAGTAGGTTCAAGGAAGCCACATTCAACACCCAATATAGCAGCAGACCTTAAATT AAAGATTGGTAAACTCTCTACTGGAGATTCTCTGGATATGTCACCTCAAGATGAGGCATCAATAACCGCAAATGATGCTGCAGTGAAAGATATGGAGTAT GCTACACTTAATTTTGATCATGCTACAGAATGCGGCTTCAAAACTGGGCCTATTGGTCGTTGTAGTTTATCTGATGCAAAAGACTCTTGTTGGTTTCAGG GTGCAGCTGTTGCCTATGTGGCCGAAATGTTACAAGTCCCAGCCATATTCGTAAAAGCCGTCACCGACATTGTGGATGGTGACAAGCCAACCGCTGAGGA GTTCCTGCAAAATCTGGCATCAGTAACTGCTGCACTCGACGAGTCTGTCACCCGAGTAGTCGATTTCATCAGTGGAAAGTGTCTTTCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10042387 pacid=23153683 polypeptide=Lus10042387 locus=Lus10042387.g ID=Lus10042387.BGIv1.0 annot-version=v1.0 MGPPHGGGSAVAASIDQQQPRPISSILIIIAMQTEALPLVNKFQLKEDLESVFPKGAPWVRYSGTYKDLEINLVWPGKDTTLGVDCVGTVSAALVTYAAI QALKPDLIINAGTAGGFKAKGAGVGDVYLVCDVAFHDRRIPIPVFDLYGVGSRKPHSTPNIAADLKLKIGKLSTGDSLDMSPQDEASITANDAAVKDMEY ATLNFDHATECGFKTGPIGRCSLSDAKDSCWFQGAAVAYVAEMLQVPAIFVKAVTDIVDGDKPTAEEFLQNLASVTAALDESVTRVVDFISGKCLSDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	0	1
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	1.4	0.9148
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	1.7	0.9137
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	3.0	0.9225
AT2G32980			unknown protein		Lus10030015 [exp]	6.0	0.8752
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	7.0	0.9063
AT4G30010			unknown protein		Lus10001443 [exp]	7.9	0.9024
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	12.3	0.9125
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	13.0	0.8970
AT1G51650			ATP synthase epsilon chain, mi...		Lus10035755 [exp]	13.0	0.8714
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	15.9	0.9097

Compare expression of checked genes

Lus10042387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.