Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34850 636 / 0 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 512 / 0 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 506 / 3e-180 Chalcone and stilbene synthase family protein (.1) AT5G13930 287 / 5e-94 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT3G52160 61 / 5e-10 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT1G71160 61 / 7e-10 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT4G34520 59 / 2e-09 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT2G46720 57 / 2e-08 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT4G34510 55 / 4e-08 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT4G34250 55 / 6e-08 KCS16 3-ketoacyl-CoA synthase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026286 [exp] 773 / 0 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 509 / 0 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 502 / 2e-178 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 300 / 4e-98 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 297 / 6e-98 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 292 / 4e-96 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 291 / 1e-95 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 220 / 7e-69 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 157 / 4e-46 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167300 [exp] 674 / 0 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 664 / 0 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 530 / 0 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 523 / 0 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 311 / 1e-103 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 310 / 3e-103 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 304 / 1e-100 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 301 / 1e-99 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 298 / 2e-98 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 298 / 2e-98 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042388 pacid=23153614 polypeptide=Lus10042388 locus=Lus10042388.g ID=Lus10042388.BGIv1.0 annot-version=v1.0 ATGGAAACTGTAAATGGCAGCAGGTCGACAAGGAAGGTCAGCCCTGGGAAAGCTACAATCTTGGCTCTGGGAAAGGCGTTTCCACATCAGCTTGTAATGC AAGAATTCCTGGTTGATGGTTACTTAAAGAACACCAACTGTGATGATCCAGTAGTCAAGGAGAAACTAACTCGACTATGCAAGACAACAACTGTGAAAAC CAGGTACGTAGTAATGTCGGACGAAATCCTCGAACAATACCCGGAGCTTGCACTCGAGGGGCAAACAACAGTAAAACAGAGGCTAGACATATGTAATGAA GCAGTGACGCAAATGGCAACCGAAGCTTCAGAAGCATGCATCAAGAACTGGGGGAAACCTGTCTCAGACATAACTCATTTGGTCTACGTCTCTTCAAGTG AAGCTAGGCTACCTGGTGGCGACCTTTACCTCGCAAAATGTCTCGGTCTCAGCCCCGAGACAAATCGAGTTATGCTATACTTCATGGGCTGTTCCGGAGG CGTGGCTGGTCTTAGAGTTGCAAAAGATATTGCAGAGAACAATCCAGGGAGTAGGGTGCTTCTCGCTACATCCGAAACTACGATCATCGGGTTCAAACCA CCCAGTGCAAGTAGGCCGTACGATCTGGTTGGTGTTGCACTCTTCGGAGATGGTGCCGGAGCCATGATCGTAGGAGCTGATCCGATTCCAGGCGACGAGT CCCCTCCTCTCTTCGAGCTTCACACAGCAATTCAGAACTTCCTGCCCGATACCGAAAAGACAATCGATGGTAGGCTTACGGAAGAAGGCATCAGTTTCAA GCTTGCAAGGGAGCTCCCTCAGATAATAGAGGATAACATTGAAGGTTTCTGTCTTAAGCTGATGGGAGTTTTAGGGCTATCTGCTGATGAGTACAATACA TTGTTCTGGGCTGTTCATCCCGGGGGGCCTGCAATCCTGAACGGGATGGAGAAGAGACTCGATTTGATGCCGGATAAACTTAATGCTAGTCGAAGAGCGC TGATGGACTATGGCAATGCTAGCAGCAATACTATTGTGTACGTGCTGGAGTATATGATCGAAGAGAGCTTGAAGATGAAGGAGAAGCAAGGACAGAGTGA ATGGGGCTTGATTCTGGCATTTGGACCTGGAATTACTTTCGAAGGGATCCTTGCGAGGAACCTCGCAATCTGA
AA sequence Show only first row Show all	>Lus10042388 pacid=23153614 polypeptide=Lus10042388 locus=Lus10042388.g ID=Lus10042388.BGIv1.0 annot-version=v1.0 METVNGSRSTRKVSPGKATILALGKAFPHQLVMQEFLVDGYLKNTNCDDPVVKEKLTRLCKTTTVKTRYVVMSDEILEQYPELALEGQTTVKQRLDICNE AVTQMATEASEACIKNWGKPVSDITHLVYVSSSEARLPGGDLYLAKCLGLSPETNRVMLYFMGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKP PSASRPYDLVGVALFGDGAGAMIVGADPIPGDESPPLFELHTAIQNFLPDTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCLKLMGVLGLSADEYNT LFWAVHPGGPAILNGMEKRLDLMPDKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKEKQGQSEWGLILAFGPGITFEGILARNLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	1.7	0.8192
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	2.8	0.7380
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	6.3	0.7211
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	9.3	0.7458
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10040741 [exp]	9.4	0.7002
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Lus10015747 [exp]	13.4	0.7175
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	14.4	0.7388
					Lus10038177 [exp]	14.7	0.6863
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	17.3	0.6980
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	17.3	0.7251

Compare expression of checked genes

Lus10042388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.