Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34860 972 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 895 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 876 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 855 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 840 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 597 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 570 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 563 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 555 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026284 [exp] 1152 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 927 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 919 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 902 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10014824 [exp] 902 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 899 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 734 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10043375 [exp] 600 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 597 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167500 [exp] 990 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 968 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 912 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.005G239400 [exp] 907 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.013G110800 [exp] 906 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.002G173600 [exp] 736 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 600 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 591 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 590 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.010G236100 [exp] 589 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10042390 pacid=23153872 polypeptide=Lus10042390 locus=Lus10042390.g ID=Lus10042390.BGIv1.0 annot-version=v1.0 ATGTCTGTGCTCCACGACGGCCTTGGCTCATTCACCGAAGTTGAGGAACTGGATTTTGCCAAGTTACTCGACAAACCGCCGAGGATGCTCAACATAGAGC GGCAGCGATCTTGTGACGCGTGCTCCCTCAGCGAACTATCTAGCAGCTTGGCGACGTCTCCTCGTTTCGCACCGTCGCGACTGGACGGGAACAGTTCCCG AGTGTTGGATCACTCGGATTTAGTGCACTCACCGGGGACCGGTAGGACCGGCTTCAATACTCCGAGGTCACTGGTTGCTGGATTCGAAACGCATCCTTAC GTCGCGGAAGCCTGGGATGCGCTGAGGAGGTCCTTGGTCCATTTCAGGGGACAACCGGTTGGGACGATTGCTGCTCTTGATAACACCGAGGAGAATCTCA ACTACGATCAGGTGTTTGTGCGAGATTTTATTCCGAGTGGACTAGCATTTCTGATGAATGGGGAGCCAGAGATTGTAAAAAATTTCATTCTGAAGACCCT ACGCCTGCAGTCCTGGGAGAAAAAGATCGATAGATTCCATCTTGGGGAAGGAGTCATGCCTGCCAGTTTCAAGGTGCTGCATGATCCAGTAAGGAACCAT GAGACTTTGATTGCTGATTTTGGTGAGACTGCCATTGGTAGGGTGGCTCCTGTGGATTCTGGATTTTGGTGGATCATACTGTTGAGGGCATACACTAGGT CTACTGGTGACACTTCATTAGCCGAACTTCCGGAATGCCAAAAGGGAATGCGGCTTATTTTGAGTTTATGCCTTTCAGAGGGTTTTGATACGTTTCCGAC ACTTCTGTGTGCTGATGGATGCTGCATGATTGATCGGAGGATGGGTGTTTATGGTTACCCAATTGAGATTCAAGTACTTTTTTTCATGGCTTTAAGATGT GCTTTGGTGTTACTGAAGCAAGATGAGGAAGGGAAAGAGTTCATGGAACGAATTGTGAAGCGCCTTCACGCCTTGAGCTACCACATGAGGAGCTACTTTT GGCTTGATTTGAAGCAACTCAATGACATATATCGGTACAAAACAGAGGAATACTCCCACACTGCAGTGAACAAGTTCAACGTCATACCCGACTCTCTTCC GGAATGGATATTTGATTTCATGCCTACTAAGGGAGGCTACTTCATTGGGAATGTGAGCCCAGCAAGAATGGATTTCCGTTGGTTTTGCTTGGGGAATTGT GTAGCCATCCTGTCATCCCTAGCCACCCCTGAACAGTCGATGGCAATCATGGACCTTATAGAATCACGATGGGAGGAGTTGGTCGGTGAGATGCCCCTCA AAGTCTGCTACCCAGCTATAGAAAACCATGAATGGAGGATAGTAACTGGCTGTGATCCGAAGAACACAAGGTGGAGTTACCACAATGGAGGATCCTGGCC AGTACTGCTGTGGCTGCTGACAGCTGCATGCATCAAGACAGGGCGTCCGCAGATTGCACGACGTGCAGTGGAGCTTGCTGAATCGAGACTAACGAAAGAT AGCTGGCCGGAGTATTATGACGGGAAGCTGGGGAGATACGTGGGGAAGCAAGCTAGGAAGAACCAAACGTGGTCGGTGGCAGGGTACCTGGTGGCTAAGA TGATGCTGGAAGACCCTTCTCACTTGGGGATGGTGGCGTTGGAAGAAGACAAACAGATGAAGCCAGTGATGAAGAGATCAAATTCATGGACCTGCTGA
AA sequence Show only first row Show all	>Lus10042390 pacid=23153872 polypeptide=Lus10042390 locus=Lus10042390.g ID=Lus10042390.BGIv1.0 annot-version=v1.0 MSVLHDGLGSFTEVEELDFAKLLDKPPRMLNIERQRSCDACSLSELSSSLATSPRFAPSRLDGNSSRVLDHSDLVHSPGTGRTGFNTPRSLVAGFETHPY VAEAWDALRRSLVHFRGQPVGTIAALDNTEENLNYDQVFVRDFIPSGLAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFHLGEGVMPASFKVLHDPVRNH ETLIADFGETAIGRVAPVDSGFWWIILLRAYTRSTGDTSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQVLFFMALRC ALVLLKQDEEGKEFMERIVKRLHALSYHMRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWIFDFMPTKGGYFIGNVSPARMDFRWFCLGNC VAILSSLATPEQSMAIMDLIESRWEELVGEMPLKVCYPAIENHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAVELAESRLTKD SWPEYYDGKLGRYVGKQARKNQTWSVAGYLVAKMMLEDPSHLGMVALEEDKQMKPVMKRSNSWTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10042390 [exp]	0	1
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	10.9	0.7968
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	14.0	0.8256
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	18.9	0.8224
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	22.5	0.8189
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	28.9	0.7273
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	29.3	0.7163
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	34.8	0.8065
AT5G03670			unknown protein		Lus10027723 [exp]	40.8	0.7596
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	44.2	0.7790
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	48.5	0.7941

Compare expression of checked genes

Lus10042390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.