Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16595 183 / 1e-56 Translocon-associated protein (TRAP), alpha subunit (.1) AT2G21160 154 / 2e-45 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2) AT2G21180 69 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026282 [exp] 292 / 3e-99 AT2G16595 254 / 5e-85 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10007577 [exp] 244 / 3e-80 AT2G16595 276 / 1e-93 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10012169 [exp] 243 / 5e-80 AT2G16595 277 / 3e-94 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10026283 [exp] 186 / 4e-59 AT2G21180 99 / 2e-27 unknown protein Lus10012173 [exp] 105 / 8e-28 AT2G21180 106 / 2e-30 unknown protein Lus10007573 [exp] 103 / 5e-27 AT2G21180 103 / 1e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168500 [exp] 236 / 2e-77 AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1) Potri.009G129800 [exp] 234 / 2e-76 AT2G21160 245 / 2e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2) Potri.004G167700 [exp] 118 / 7e-33 AT2G21180 91 / 2e-24 unknown protein Potri.009G129200 [exp] 76 / 7e-17 AT2G21180 55 / 2e-10 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03896 [flax] [poplar] TRAP_alpha Translocon-associated protein (TRAP), alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10042391 pacid=23153948 polypeptide=Lus10042391 locus=Lus10042391.g ID=Lus10042391.BGIv1.0 annot-version=v1.0 ATGTATTACTACGGGAGGTCAAGAAGCGACTCCTTCTTAGATTCCTTCACACTGAACCCACTCCCATACCCAGTTCTGCTGATCCTCGCCGTCATCGCCC TCTTCCTCGGATCATCCTGGTACTTCAGCTACGAGGAGCTCGTCGAATCCACCGAGTCCCAGTTCGGGTGGGGCCTCTTCGTCCTCCCCGTTCTCTTGAT CTTCGTTGTCCGTTGGCTGTCTTCCTTTGACAGCTCAGACATGTTCTGCGGGCTGTCGCCTAGGGAGTTCCGGCGGCGGACCCACTATATCCAGTCGTCC TCTGAAGGGAGCTCGCCGTGGGGTGTGGCGGCGCTCATACTCCTTCTGCTCGTCCTGTTGCACTACCAGTCTGCTTTCCTCGACAGCTGTGCAGCTTCTG GGGTTGATACCGTTAGTGTTTTCCCCAAAAACAGCGCCAAGAGAGAATCTAGCATTAACATAGTTGTAATTAAAGCCAGTGTTCATCTTCCAGTGGATCA CCGTGTTCTTGTTCAGAATCTCACTGCCCAGGCCTTCAAGAATGCAACTGTTCCAGCCTCAGTGCATGCTACATTCCAGTATATTTTTGCAGTGAGCAAG TTTCTCCAGTCTGGAACCTTCGATCTTGTTGGCACTATCATTTATGAGATAGACCAGCATCCATACCAGAGCACCTTCTACAATGGCACCGTTGAAGTTG TTGAATCTGTTGATTTCAGCATGGAGTCGGTGTTCCTTGTTACTCTTGGAATTGCACTTCTTATCCAGTTTGGTTTATGGATTCATAGTCAAATGCGGAA CGCCTCTAAAAAAAATAAGAGGACCCTGAAGGTAGAAGTTGGTACTGTGACTAGAGATGCTTCGTTCGATGAATGGCTCGAGGTAATTAAGCGCCATTCT GAATCTTGA
AA sequence Show only first row Show all	>Lus10042391 pacid=23153948 polypeptide=Lus10042391 locus=Lus10042391.g ID=Lus10042391.BGIv1.0 annot-version=v1.0 MYYYGRSRSDSFLDSFTLNPLPYPVLLILAVIALFLGSSWYFSYEELVESTESQFGWGLFVLPVLLIFVVRWLSSFDSSDMFCGLSPREFRRRTHYIQSS SEGSSPWGVAALILLLLVLLHYQSAFLDSCAASGVDTVSVFPKNSAKRESSINIVVIKASVHLPVDHRVLVQNLTAQAFKNATVPASVHATFQYIFAVSK FLQSGTFDLVGTIIYEIDQHPYQSTFYNGTVEVVESVDFSMESVFLVTLGIALLIQFGLWIHSQMRNASKKNKRTLKVEVGTVTRDASFDEWLEVIKRHS ES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16595			Translocon-associated protein ...		Lus10042391 [exp]	0	1
AT1G11655			unknown protein		Lus10020050 [exp]	9.2	0.9346
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	14.8	0.9331
AT3G25590			unknown protein		Lus10034409 [exp]	18.3	0.9126
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	19.9	0.9197
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	21.0	0.9194
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	21.4	0.8708
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	22.0	0.9043
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	24.5	0.8964
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	25.3	0.9185
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	26.5	0.9173

Compare expression of checked genes

Lus10042391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.