Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38770 88 / 1e-18 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) AT2G21140 82 / 3e-17 ATPRP2 proline-rich protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026281 [exp] 231 / 1e-70 AT2G21140 120 / 2e-30 proline-rich protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129900 [exp] 138 / 5e-37 AT4G38770 153 / 1e-42 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) Potri.004G168600 [exp] 135 / 6e-35 AT4G38770 164 / 6e-45 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10042392 pacid=23153520 polypeptide=Lus10042392 locus=Lus10042392.g ID=Lus10042392.BGIv1.0 annot-version=v1.0 ATGAACATGCTTTCCAGTGGTAGAGGGGCACTAATTTTGTGCCTCTCGCTTCTCTTCGTCTCTGCCACTCTCTGCCATGGCGCCCAGGTTGTTGGTTTTG GAGAATGTGCTGACTGTGCCAAGTCTCAACTTCTCCCCAGCCAGATCTTCTCAGGTCTTCATGTGACAATTGATTGCAAGCCAAAGAATGGAGAGTTCAA GACGATAGGATCCGGGAAGCTTGACGAGGAAGGCAAGTTCAGCGTGTCCCTCCCAAACGACGTCTTGGCTGCAGATGGTCAGAAACTCAAACAAGAATGC TACGCTCAGCTCCACAGCGCCGCCGACGGTGCCGCTCCATGCGCTGCGCACGGCGGCCTGGAGTCAACCAAGCTCGTGTTCAACTCTCAAAAGAAGACAT TCGAGCTCTCCGGCGGGAAAATTAAATTCTCGCCCGAGACACCACTTGTCAAGCCGCCGCCTTACATCCCAAAGCCGACCCCGAAGCCGCCTGTCGTGGT GAAGCCGCCATACATTCCGAAGCCGACACCAAAACCGCCGGTTGTGGTGAAGCCGCCTTATATCCCCAAGCCTACACCCAAACCGCCGGTTGTGGTGAAG CCGCCGGACATTCCAAAGCCGACACCCAAACCGCCGGTTGTGGTGAAGCCGCCTTATACCCCAAAGCGCACCCCTAAGCCGCCGGTTATAGTGAAGCCGC CGTACATCCCAAAGCCAGAGCCACCGCCGATGCCAAAGAAGGAGTGTCCACCGCCGGCGCCGATCTACAAGCCAAAGCCACCAGTTTACCACAAGCCTCT GCCTCCATTCCCGAAGGTTCCTATCTACCATAAGCCTCTGCCGCCGATCCCAAAGGTTCCGATCTACCATAAGCCTCTGCCACCGATCCCAAAGGTTCCG ATCTACCACAAGCCTCTACCTCCATTGCCAAAGGTTCCGATCTACCACAAGCCTCTGCCTCCATTGCCAAAGGTTCCCATATACCACAAGCCTCTGCCTC CATTGCCCAAGGTTCCGATTTACAAGCCGCACCCAAAACCACCGATCTCCTTACCTCCAATCCCGAAGGTTCCAATTTACAAGCCGTACCCAAAACCACC AATCTCTCTACCTCCGATCCCGAAGGTTCCAATCTACAAGCCATACCCAAAACCGCCGATAACTCTGCCTCCGATCCCAAAGTTTCCACCTTTCCACAAG AAACCATGCCCGCCTCTTCCCAAGCTTCCTCCATTCCCCAAGCATCATAAGTTTGGAAGCTGGCCACCTCTCCCACCCTTCTCCCCTATTCATTAG
AA sequence Show only first row Show all	>Lus10042392 pacid=23153520 polypeptide=Lus10042392 locus=Lus10042392.g ID=Lus10042392.BGIv1.0 annot-version=v1.0 MNMLSSGRGALILCLSLLFVSATLCHGAQVVGFGECADCAKSQLLPSQIFSGLHVTIDCKPKNGEFKTIGSGKLDEEGKFSVSLPNDVLAADGQKLKQEC YAQLHSAADGAAPCAAHGGLESTKLVFNSQKKTFELSGGKIKFSPETPLVKPPPYIPKPTPKPPVVVKPPYIPKPTPKPPVVVKPPYIPKPTPKPPVVVK PPDIPKPTPKPPVVVKPPYTPKRTPKPPVIVKPPYIPKPEPPPMPKKECPPPAPIYKPKPPVYHKPLPPFPKVPIYHKPLPPIPKVPIYHKPLPPIPKVP IYHKPLPPLPKVPIYHKPLPPLPKVPIYHKPLPPLPKVPIYKPHPKPPISLPPIPKVPIYKPYPKPPISLPPIPKVPIYKPYPKPPITLPPIPKFPPFHK KPCPPLPKLPPFPKHHKFGSWPPLPPFSPIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	1.4	0.9455
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	2.8	0.9453
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	3.7	0.9308
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	3.9	0.9412
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	5.5	0.9326
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	5.7	0.9392
					Lus10038294 [exp]	5.7	0.8945
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	6.0	0.9250
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	8.5	0.9025
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	8.9	0.9340

Compare expression of checked genes

Lus10042392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.