Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21120 310 / 2e-105 Protein of unknown function (DUF803) (.1) AT4G38730 297 / 2e-100 Protein of unknown function (DUF803) (.1) AT1G34470 247 / 2e-80 Protein of unknown function (DUF803) (.1) AT1G71900 244 / 1e-79 Protein of unknown function (DUF803) (.1) AT4G09640 228 / 8e-73 Protein of unknown function (DUF803) (.1) AT4G13800 224 / 8e-72 Protein of unknown function (DUF803) (.1) AT3G23870 214 / 4e-68 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026280 [exp] 365 / 1e-126 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 283 / 6e-95 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 276 / 9e-92 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 233 / 4e-75 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 230 / 1e-74 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 187 / 3e-57 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 179 / 4e-54 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 150 / 5e-44 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168900 [exp] 349 / 4e-121 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 277 / 2e-92 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 273 / 7e-91 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 255 / 1e-83 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 246 / 3e-80 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 243 / 2e-79 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 230 / 3e-74 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 229 / 7e-74 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 229 / 2e-73 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10042393 pacid=23153521 polypeptide=Lus10042393 locus=Lus10042393.g ID=Lus10042393.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCGGAGAATACCAAAGGTCTGATATTGGCTGTTGCTTCTAGTGCGTTTATTGGCTCCAGCTTCATCCTGAAGAAGAAAGGCCTCAAGCGAG CTGGTGCTTCTGGTACCCGTGCAGGAGGTGGAGGTTATACTTATTTACTTGAGCCACTATGGTGGGTTGGCATGGTTACCATGATTGTTGGGGAGGTTGC GAATTTCGTGGCTTATGTTTATGCTCCTGCCGTTCTAGTGACTCCTCTTGGGGCGCTAAGTATAATTATCAGTGCAATCTTGGCACACTTCATGCTGAAC GAACGACTTCCGAGAATGGGTATTGTTGGCTGCGTTTCATGCATTGTTGGATCAGTAATAATTGTCATCCATGCTCCTCAAGAACAGACCCTAAATTCTG TAGAAGAAATATGGAATTTAGCAACTGAGCCAGCCTTTTTGGTATATGTAGCTGTCACAGTCTCAACAGTGTTAGTTTTGGTTTTGCACTTTGAACCAAG ATTTGGTCAGACAAACATGTTGGTCTACTTGGGAATATGCTCTTTGATGGGTTCTATCACTGCGCTAGATACGTTTAATGCAGCAATTGTTTCTCCTGTC TATTATGTTATGTTCACAACGTTGACTATTGCTGCTAGCGCTATAATGTTCAAGGATTGGGCAGGTCAAGATGCCAGCAGCATTGCATCTGAGATATGTG GCTTTATCACTGTTCTTTCGGGGACTATTATACTTCACTCAACAAGAGATCAGGAACCTCCTCCTCCACGAGGAACTGTGTCATGGTATGTTAGAGACGA TTCTTTCAAGAATATTGATGGAGAACATTTACTCAACATTTTGGACTCTGAAGAACAATAA
AA sequence Show only first row Show all	>Lus10042393 pacid=23153521 polypeptide=Lus10042393 locus=Lus10042393.g ID=Lus10042393.BGIv1.0 annot-version=v1.0 MGVSENTKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGGGGYTYLLEPLWWVGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIISAILAHFMLN ERLPRMGIVGCVSCIVGSVIIVIHAPQEQTLNSVEEIWNLATEPAFLVYVAVTVSTVLVLVLHFEPRFGQTNMLVYLGICSLMGSITALDTFNAAIVSPV YYVMFTTLTIAASAIMFKDWAGQDASSIASEICGFITVLSGTIILHSTRDQEPPPPRGTVSWYVRDDSFKNIDGEHLLNILDSEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38730			Protein of unknown function (D...		Lus10042393 [exp]	0	1
AT5G11700			unknown protein		Lus10011144 [exp]	6.9	0.8443
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	17.1	0.8242
AT1G60995			unknown protein		Lus10033791 [exp]	17.7	0.8422
AT3G14910			unknown protein		Lus10043078 [exp]	26.2	0.8381
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	36.7	0.8302
AT2G32970			unknown protein		Lus10035309 [exp]	38.3	0.8264
AT3G54000			unknown protein		Lus10016465 [exp]	40.8	0.7420
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	69.1	0.7980
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	79.8	0.7314
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10031431 [exp]	85.4	0.7763

Compare expression of checked genes

Lus10042393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.