Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16630 143 / 1e-39 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G15780 44 / 8e-05 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026279 [exp] 431 / 6e-152 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10024890 [exp] 46 / 1e-05 AT2G20515 154 / 2e-48 unknown protein Lus10022928 [exp] 43 / 7e-05 AT2G20515 173 / 3e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169200 [exp] 284 / 4e-94 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G060800 [exp] 43 / 0.0001 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.005G224600 [exp] 42 / 0.0001 AT2G20515 177 / 8e-58 unknown protein Potri.005G200900 [exp] 42 / 0.0003 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G038200 [exp] 41 / 0.0003 AT2G20515 189 / 2e-62 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10042394 pacid=23153610 polypeptide=Lus10042394 locus=Lus10042394.g ID=Lus10042394.BGIv1.0 annot-version=v1.0 ATGGATTGGTCATCATGCTGCAAGCTGCTCTTCTCAGCAGCTCTCCTCCTTTTAGCAGTCATTGATGGAGCTCGAGCAGATGCCACTGTATCCGGCTCTG TCTTCTGCGACCAATGCAAAGATGGTCATCTCTCTCTCTTTGACTACCCCATGACTGGGGTGAGGGTAACAATGGCGTGCGTGGATGAGAATGGGGAAAC GTTGATGTCAAGAGAAGAGAGGACGAACATGTTCGGATGGTACAACATAAGGTTCGACGGAACCCCGGATTTGAGGAACTGCTATACCCAATTCGCCCCT GATTCTTCTTCAACAGGGGAAGGAAGTAGTAGCAGTGGTGGCTCTGCAAATTCATGCATCGCAGCAGCTGGGCCTCCTCAGAAATTGAGGCTGATGTTCA ATATGTTTGGAATGGAGATGTACAGTGTTGATTCGTTGCTGTCTCAGCCTGCTAAACCCATGTCCTTTTGTCCCAATTCCTCACCCTCCACCCCGCGGTC TAATGTCCCACCACCACCACCGCCGTCTCTTCCTTCTTCTTCGTCTCCGCCTTCTCCTCCTGCTTTCACGATTCCGCCAATGCCGCCCATGCCATTCGCC GAAGCTTCTGCTTGTCCTCACCAGACATGGACGGCGGCAGAGTACAGATGCTACTGGAGGATAGTGTCGCCGGAGACAAAAGTAGCCGTTGCATTTGGTC TGCCGGCGGCCCAAAGGTACGGAACAGAGATGACTCTGTTGGAAGCATTGCAAGGGAGAGGAGACCCTTACAGGACGCTACTGAGGGAAGCCACAACCTC GCTCCTCAACTCCTACAACAGCCTTCGCTTCCGTTACGACGCCGTCAGTGTGGTGGCGCGTACCAACTATGCGCTGTTGGGTTCTCAGAGAGATGCTCTG TATACAGAAGTGATCCGACGACGTACGACCGAGATGGTGCGCAGTAATGGGCGAATTGGTTATGACTATACCTCGTTACTTGCTACTCCATTCTTATTGT GTGTAATGAAATTATATGATCATACAGTTACATAA
AA sequence Show only first row Show all	>Lus10042394 pacid=23153610 polypeptide=Lus10042394 locus=Lus10042394.g ID=Lus10042394.BGIv1.0 annot-version=v1.0 MDWSSCCKLLFSAALLLLAVIDGARADATVSGSVFCDQCKDGHLSLFDYPMTGVRVTMACVDENGETLMSREERTNMFGWYNIRFDGTPDLRNCYTQFAP DSSSTGEGSSSSGGSANSCIAAAGPPQKLRLMFNMFGMEMYSVDSLLSQPAKPMSFCPNSSPSTPRSNVPPPPPPSLPSSSSPPSPPAFTIPPMPPMPFA EASACPHQTWTAAEYRCYWRIVSPETKVAVAFGLPAAQRYGTEMTLLEALQGRGDPYRTLLREATTSLLNSYNSLRFRYDAVSVVARTNYALLGSQRDAL YTEVIRRRTTEMVRSNGRIGYDYTSLLATPFLLCVMKLYDHTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	0	1
AT4G32900			Peptidyl-tRNA hydrolase II (PT...		Lus10011608 [exp]	1.0	0.9702
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	3.9	0.9338
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	4.0	0.9363
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	4.5	0.9335
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	6.9	0.9071
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	8.1	0.9249
AT3G19550			unknown protein		Lus10013900 [exp]	8.5	0.9247
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	9.2	0.9090
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	9.5	0.9195
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	10.2	0.9090

Compare expression of checked genes

Lus10042394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.