Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16910 254 / 3e-77 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 75 / 3e-14 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 68 / 7e-12 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G10610 67 / 1e-11 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21330 59 / 1e-09 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 55 / 8e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G28160 52 / 7e-07 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT4G16430 49 / 6e-06 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 49 / 7e-06 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 49 / 1e-05 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026278 [exp] 659 / 0 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 76 / 1e-15 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 76 / 2e-14 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043199 [exp] 72 / 4e-13 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 72 / 4e-13 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10018395 [exp] 64 / 2e-11 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 55 / 1e-07 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039631 [exp] 51 / 1e-06 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 51 / 1e-06 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136300 [exp] 350 / 3e-114 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 86 / 2e-17 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 70 / 9e-14 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G106000 [exp] 68 / 9e-12 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.015G105200 [exp] 66 / 2e-11 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.004G029800 [exp] 53 / 7e-08 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 52 / 8e-07 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G221100 [exp] 51 / 2e-06 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 49 / 7e-06 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 49 / 1e-05 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042395 pacid=23153681 polypeptide=Lus10042395 locus=Lus10042395.g ID=Lus10042395.BGIv1.0 annot-version=v1.0 ATGAGGCAAATTTTGGATGGCATTTTCCAGCATCCAACTACCAAGTCCTGTGAACTTCTTTCCCATCTCCCTACTACATTGTCCCTCGACGAATCCGGGA ACATTCATGCAGAAGCTTTGATTTCCAACTTCCCAAGGTGGTTGAACTTTTCAAGCAGTTCATCAGGGTCAACCCTCCTTGAGGAAACGGTGGGAACTCG AGTTTTGATCCCGGTTCCAGGTGGTCTTATAGAGCTATTTGTTGCTAAACAGGTTCCGGAAGACCAGCAAGTAATAGAGATAGTGAAATCTGAGTTCAGC AGTGTTATGATGATGAACCATCAGGAAGCTGTGGAATCAGCAGATTTCTCAGTCAGCATTATGAGCACCGAGGAAATTTTCCATCCGCAAAGTTATGACT TCTCAGTAGACAGACTCCACGGAATGTGTAGCTCTCCGATGAACTTGCTCCAGCAGTTCAGTTACAGCAATGAGGAGAATAACTTAACAACAAAGAGCAA TAATAACAACAACAGCAGCCTTTTCTTTGAAGGAGGTGAAGAACAGAATGGTGGTAATAACAATAATGAGATGCATCAGAATCATCATCATGAAGAAGTG GAATTTGGGGAGTCGACGGTAGGGAAGGAGCAGCAGCAAGGGAATGATCATGACAAGGAAGGGATTAAGCAGGAGATGAATGGGAGATCGGATTCGATAT CAGATTGTAGCGATCAGAATGCTGATGATGATCAGCAGCAGTATAGTAATAAGTACAGGAGGAAAAATGGGAAGCCTGAAGCCAAGAACCTCCAAGCTGA GAGGAGGAGAAGGAAGAGGCTTAATGGGAGGCTCTATGATCTAAGGGCCTTGGTTCCTATAATCTCGGATTTGAAGAAGGCCTCGATAATTGGAGATGCA ATCGAGTTTGTGAAGGAGTTGAAAAGGCAAGCCAAGGAGCTTGAAGAGGAGCTTGAAGCCAATTCAGATGATGAAGAAATTTCAAGAAACAGCATCTACA ACAACAACAATAACAACAACAGTATGGCAGCAACACATGTTGTTCTTGGTCAGAATGTCGGAATGAACGAACCAGACAGTACTGTTTCCGGGTTGGCAAA AGTACTGAATCAGGAATCAGAAATCAACCATGAGAAAGGCCAGCAAATGGAGGTACAAGTGGAAGTAGCACAAATAGATGGGAATGGCTTCTTTGTGAAG GTGTTCTGTGAACACAGGGCAGGTGGGTTTGTGAGATTGTTAGAGGCATTGGATTCTCTTGGCTTAGAAGTTACAAATGCCAATGTCACCAGCTGCAAAA GCCTCGTCTCCAATGTGTTTAGGGTTCAGAAGAAAGATAGTGAAATGGTACAAGCAGAATATGTGAGGGATTCATTGCTGGAGCTGACAAGGGAGCCACT GCCAAGAACATGGACAGAGATTCAGGTCAAAGCTTCTGAGAATGGGAATGGAATTATGGACCATCATCATCACCAGCATCATCTTCATCCCAACAATTAT AGTCACCACCAAGTGATGCAGCAAAATGGTCATCTCATGAATTCTGATCACCTTTACCCTGCAACAGCTCCACAGTTAAACATGTCTTTTAGTAATTTGA TCTGA
AA sequence Show only first row Show all	>Lus10042395 pacid=23153681 polypeptide=Lus10042395 locus=Lus10042395.g ID=Lus10042395.BGIv1.0 annot-version=v1.0 MRQILDGIFQHPTTKSCELLSHLPTTLSLDESGNIHAEALISNFPRWLNFSSSSSGSTLLEETVGTRVLIPVPGGLIELFVAKQVPEDQQVIEIVKSEFS SVMMMNHQEAVESADFSVSIMSTEEIFHPQSYDFSVDRLHGMCSSPMNLLQQFSYSNEENNLTTKSNNNNNSSLFFEGGEEQNGGNNNNEMHQNHHHEEV EFGESTVGKEQQQGNDHDKEGIKQEMNGRSDSISDCSDQNADDDQQQYSNKYRRKNGKPEAKNLQAERRRRKRLNGRLYDLRALVPIISDLKKASIIGDA IEFVKELKRQAKELEEELEANSDDEEISRNSIYNNNNNNNSMAATHVVLGQNVGMNEPDSTVSGLAKVLNQESEINHEKGQQMEVQVEVAQIDGNGFFVK VFCEHRAGGFVRLLEALDSLGLEVTNANVTSCKSLVSNVFRVQKKDSEMVQAEYVRDSLLELTREPLPRTWTEIQVKASENGNGIMDHHHHQHHLHPNNY SHHQVMQQNGHLMNSDHLYPATAPQLNMSFSNLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	0	1
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	2.0	0.7946
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	4.9	0.8218
					Lus10032733 [exp]	5.2	0.7206
					Lus10021979 [exp]	6.9	0.7368
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	7.9	0.7855
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	8.8	0.7935
AT5G49350			Glycine-rich protein family (....		Lus10034447 [exp]	9.6	0.7005
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	9.6	0.7407
					Lus10004853 [exp]	10.2	0.7935
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	11.4	0.7935

Compare expression of checked genes

Lus10042395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.