Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16900 145 / 3e-40 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) AT4G35110 143 / 2e-38 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT2G20960 119 / 1e-28 PEARLI4 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT4G38550 115 / 1e-27 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT5G11140 110 / 1e-27 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT2G20950 110 / 6e-26 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT4G38560 108 / 2e-25 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2) AT2G16860 50 / 2e-06 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026277 [exp] 682 / 0 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10007582 [exp] 157 / 1e-41 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012164 [exp] 143 / 1e-37 AT2G16900 122 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Lus10028463 [exp] 70 / 1e-12 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 70 / 2e-12 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10039220 [exp] 42 / 0.0005 AT2G16860 421 / 1e-149 GCIP-interacting family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176100 [exp] 295 / 5e-94 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.009G136400 [exp] 276 / 2e-87 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176200 [exp] 52 / 4e-07 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4)
Representative CDS sequence Show only first row Show all	>Lus10042396 pacid=23153752 polypeptide=Lus10042396 locus=Lus10042396.g ID=Lus10042396.BGIv1.0 annot-version=v1.0 ATGGCTGATAATGGAAGGGTCCATCCTGAGTGTGTTAACGCTGACAATCCCTATCATGAGTGTGGAGTAGCTTGCCTTGAGAAGATTTCCCAGGGCATCA CTCGAAAGTCTAAGACCAAGAAGAAATCAGGTAACGGGAGAGGTGTAAAACATGGTCAGCAAATCAGAAGCATGGATGGAGGAAGAAGAGTTGCTAATCC AAGTTGTCCAAAAGCTGCAAATCCTTTCCATGAATGTGGCAAATACTGTACTAATAAACCTGCCGGTGAAGCAACTGATAAAGATGCAGGATCCTTCATT CTTGGGGCTCCTGTGAGCATGATAAGGAAAAAGAAGGAAGCTTTGTCTCATCCAAATTCACCTCATGCTAATGTTTCTTCCCCAAAATCACCTTCCTCTG TTAAGAAGGCGGTAGAATCAGAAACCAGCCGGTCTACCACCTCATCTCAACAGCAACCCGAGGAAGGTGATTCTCGAGATGAGATCGAAATTCAACCTCA CCAATCAATTCTTGCCTCTGGGATTATAACGCCTGATGGTCCCATTAGCCCATCCGAGGGCAGTTTTACATGCTTTGCTGCGGGTCCCAATGCGACCAAA GAAGAACTCGAACAAGATCTTGATGCTTCATCTCCTAAACCGAATAATACAAACGATCATGAACCAATTATAAAGACTATGGAGTTAAGCTTTTCTGGCA TTTCACGAGTGTCACGTGACAGTGACGACGATGAAGTGCAGTCCGTTTTATCAGATTCTTGCGTATCGGTTGGAAAATATCATGTCCGAGCAACCATTGC CTCCATCTTATCCTCGATCTTCCTAAAGTATGGGGACATAGCTGAAAACTGTAGGTTGGAATCAGTTTCGATGCGTGCATATTATCTCGAATGCATGTGC TCCGTGGTTCAGGAGCTGCAGTCTCTTAACATCAAGCAGCTGACGAAATCTAAAGTGAAAGAACTGCTGGCAGTTCTCAAGGATGTGGAATCGGCAGGGA TCGATGTGGAATGGCTGCGAGATGTCCTGAATGAACTCGCTTTAGCTGTGCAGCTCAACAACCAGCACCAAGCTAGCGAGGCTGCAAAAGCGGAGTGTGA TCAGGCAGTAGAATCGGTGAAGAAAGAACTCAAATCCTTGATGGAGGATTTGGCTATAAAAGAGCAGGCAGTTGCAGAAGCCAGATCGAAAGTTGATGAA ACGAGGGATCGGTTAAGCCAACTGGAGGCTGAATCTTCGAGGCTGAGTGAGTCTGTTTCGTCTAGTTGGTCGTTGGTGGAAAAGTTCCATTCCAAAACTC TTGCAGATGATATATTGTGA
AA sequence Show only first row Show all	>Lus10042396 pacid=23153752 polypeptide=Lus10042396 locus=Lus10042396.g ID=Lus10042396.BGIv1.0 annot-version=v1.0 MADNGRVHPECVNADNPYHECGVACLEKISQGITRKSKTKKKSGNGRGVKHGQQIRSMDGGRRVANPSCPKAANPFHECGKYCTNKPAGEATDKDAGSFI LGAPVSMIRKKKEALSHPNSPHANVSSPKSPSSVKKAVESETSRSTTSSQQQPEEGDSRDEIEIQPHQSILASGIITPDGPISPSEGSFTCFAAGPNATK EELEQDLDASSPKPNNTNDHEPIIKTMELSFSGISRVSRDSDDDEVQSVLSDSCVSVGKYHVRATIASILSSIFLKYGDIAENCRLESVSMRAYYLECMC SVVQELQSLNIKQLTKSKVKELLAVLKDVESAGIDVEWLRDVLNELALAVQLNNQHQASEAAKAECDQAVESVKKELKSLMEDLAIKEQAVAEARSKVDE TRDRLSQLEAESSRLSESVSSSWSLVEKFHSKTLADDIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	0	1
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	2.0	0.9491
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	3.2	0.9415
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	3.2	0.9530
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	3.9	0.9526
					Lus10033269 [exp]	4.2	0.9530
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	5.0	0.9263
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	6.5	0.9323
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	7.5	0.9437
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	7.5	0.9431
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	8.4	0.9483

Compare expression of checked genes

Lus10042396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.