Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02400 457 / 6e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 318 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 238 / 1e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 238 / 7e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 234 / 4e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 231 / 6e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 229 / 2e-73 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 229 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 226 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 226 / 5e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026273 [exp] 650 / 0 AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 311 / 2e-105 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 251 / 3e-81 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 242 / 4e-78 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 244 / 5e-77 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10026070 [exp] 226 / 4e-72 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 225 / 2e-71 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 223 / 1e-70 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 222 / 3e-70 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230900 [exp] 493 / 8e-177 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G076300 [exp] 300 / 4e-101 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G257700 [exp] 266 / 1e-86 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 245 / 2e-79 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 237 / 4e-76 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 234 / 3e-75 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 234 / 6e-75 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 234 / 7e-75 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 233 / 9e-75 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 233 / 2e-74 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10042399 pacid=23153599 polypeptide=Lus10042399 locus=Lus10042399.g ID=Lus10042399.BGIv1.0 annot-version=v1.0 ATGGGATCATCATCCAACAACATCAACGACGCTCCAGTGTGCGTCACCGGCGCCAACGGCTTCATCGGCTCCTGGGTGGTCCGAACCCTCCTCGAAACTG GTTACACCCAAATCCACGCGTCCATCTACCCAGGCTCCGACGCTTCACACCTCTTCCAACTCCCACGCGCCACCCCGGACCGCCTCAAAATCTTCCACGC CGACCTCCTCGACACCCACGCACTCTCCGCCGCAATCTCCGGCTGCCGGGGAGTCTTCCACGTCGCATCCCCTTGCTCTCTCGAGGACCCCGCCGATCCC GAACGCGATCTCATCCTCCCCGCCGTCCAAGGCACTCTCAACGTCCTTCAATCCGCCTCCGGCAATCCCGACCTCTCCCGCGTCGTCCTCACCTCTTCCA TCTCCGCCTTGGTCCCAAACCCTGATTGGCCGTGCGGAAACGTCTTCGACGAGTCCTCGTGGACCGATCTCGATTACTGCAGGTCACGCAGGAAATGGTA TCCCGTGTCCAAGACGCTAGCGGAAAAGGCTGCGTGGGAGTTTGCGGTGAAGAACGGGGTGGATTTGGTGGCTATTCATCCGGCTACGTGTTTGGGTCCG TTGTTGCAGCCAGGCCTCAATGCCAGCACTGCTGTTTTGAAACAGTTGCTGGAAGGATCGCAGGACACGCAAGAGTATCACTGGTTGGGAGCCGTCCATG TCAAGGATGTGGCTATGGCGCAAGTTTTGTTATACGAGACTCCTGCTGCTTCTGGTAGATATCTCTGCACCAATGGCATCTACCAGTTTCGAGACTTTGC TCACAGGGTTTCCACCCTCTTCCCTAACTTCCCTGTATACAAGTTCCCGGAGGAGACTCAACCTGATCTAGTTGCCTGCGATAGTGCTGCTAAGAGGTTA ATCGATCTGGGATTGGAGTTCACACCTGTGGAAGATGCTGTACGAGAAACAGTAGAAAGTCTGAAAGCTAGAGGCTTACTTGCTGAGCCACAATCATAG
AA sequence Show only first row Show all	>Lus10042399 pacid=23153599 polypeptide=Lus10042399 locus=Lus10042399.g ID=Lus10042399.BGIv1.0 annot-version=v1.0 MGSSSNNINDAPVCVTGANGFIGSWVVRTLLETGYTQIHASIYPGSDASHLFQLPRATPDRLKIFHADLLDTHALSAAISGCRGVFHVASPCSLEDPADP ERDLILPAVQGTLNVLQSASGNPDLSRVVLTSSISALVPNPDWPCGNVFDESSWTDLDYCRSRRKWYPVSKTLAEKAAWEFAVKNGVDLVAIHPATCLGP LLQPGLNASTAVLKQLLEGSQDTQEYHWLGAVHVKDVAMAQVLLYETPAASGRYLCTNGIYQFRDFAHRVSTLFPNFPVYKFPEETQPDLVACDSAAKRL IDLGLEFTPVEDAVRETVESLKARGLLAEPQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	0	1
					Lus10042417 [exp]	3.3	0.7685
AT5G25360			unknown protein		Lus10002164 [exp]	8.1	0.7361
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10029937 [exp]	12.2	0.6740
AT1G28250			unknown protein		Lus10014006 [exp]	13.7	0.7477
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	16.7	0.7409
AT3G13950			unknown protein		Lus10029088 [exp]	22.5	0.7383
AT1G11070			unknown protein		Lus10038307 [exp]	27.3	0.7328
AT1G28250			unknown protein		Lus10015429 [exp]	28.1	0.7106
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	28.2	0.7078
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	29.8	0.6854

Compare expression of checked genes

Lus10042399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.