Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02500 372 / 5e-125 MCT, ATMEPCT, ISPD 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G02410 368 / 3e-124 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026271 [exp] 523 / 0 AT2G02500 373 / 7e-130 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026272 [exp] 497 / 1e-174 AT2G02410 382 / 1e-134 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230200 [exp] 416 / 4e-142 AT2G02500 381 / 1e-133 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.003G046600 [exp] 398 / 1e-135 AT2G02410 375 / 2e-131 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF05991 [flax] [poplar] NYN_YacP YacP-like NYN domain CL0110 [flax] [poplar] GT-A PF01128 [flax] [poplar] IspD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042400 pacid=23153508 polypeptide=Lus10042400 locus=Lus10042400.g ID=Lus10042400.BGIv1.0 annot-version=v1.0 ATGTGGCTGAAGAAAGCTGAAACTAACGAGTCTGTTCTAGGAAAAAAGAAGAACAAAGTGAACGAAGAAACGCAAATAGACGACGAGCTCAGGACTCAGG AGTGTTGGGTGAATGCTGCTTCTTTGTCCATGAAAATTGCTCTATCTTCTTCTTCTTCTTCTTCTTCCACAATCCCAGTTCTTCGCCATGCTGCTGCTTT TACCCTTCAATCCGTTTCTTCAACCTCTTATCGCAACCGCAAATCCAACTTGATTCGCGTGATGGCCAAATCCAAGAAGCCTTCCTCTTCCCATACCCCC TCCCAGGGCTCCTCCGACCCACCTCCTAGAATTACATCAAATGTCAAGCAGAATTTGCAGTTTCTCAAGCTTTGGAAGGAGCTTGAAAAGCGCAGATCTT CCACTCCTAGGCCTGCTACAAGTTACCGCAGAAAGAAGGTGGAGAAGGAAATCGTTCCTGTAGATACACAGGAGATTTATCGTGATCCAACCTTCACTCT CTACCACACAAACCACATGCCAAATACTGCTTTCCCAGTCTTGCTTGTTGATGGCTATAACGTATGTGGCTACTGGATTAAACTTAAAAAACACTTCATG AGTGGAAGGCTTGACATTGCTCGCCAGAAGCTAGTCAACGAACTTATAGCCTTCAGTGTGCATAAAGAGGTGAAAGTGGTAGTAGTCTTTGATGCCATGA TGTCAGGACTGCCTACACACAAGGAAACTTTTGCTTGTGTTGATATTATTTACTCGGGTGAAACATGTGCTGACTCATGGATTGAAAGGGAGGTTATGTG CTTGAGGCAAGATGGATGCCCCAAAGTCTGGGTTGTGACATCGGATCATAAGCAACAAGATGCTGCACATGGAGCGGGAGCCTTTGTTTGGAGTTGCAAA GCCTTGGTTTCCGAGATTAAGGCAGCGCAGAAGGAGGTGGATATGATGATTCAAGAGCAAAGACCAACCTCTTTTCAGGGGAAACTGCTAAAGCACAACC TTAACTCAGAAGTAGTGGGTGCTCTCAAGGACTTGAGAAACAAGCTGTACGAGAATGAGCGCAAAAAGCAAGTCTCTAAAGCTTTAACCTTCTTGTTCTC CTCTCTACTACTAGTATTAGTTTCATTTCCTCCATTTTCAGGTTGCAAAATCATTGCCACCCAGAAGCCCAGATTCGCCCTCTCTCCCATCAGATGTTCC GCTACCCCGCTGCAAAATGGCTCCGGAGCTGTGAAAGAGCGGAGTGTTTCAGTTATTCTGTTAGCTGGAGGACAAGGCAAAAGAATGGGTGCCGGCATGC CAAAGCAGTACCTACCTCTTCTTGGTCAATCAATTGCTCTCTACAGTTTCTATACATTCTCAGGGATGATTGAAGTGAAGGAAATTGTTGTAGTCTGTGA TCCATCCTACAGTGACGTCTTTGAAGATGCTGAAGAAGAAATCGACATAGACCTTAAATTTGCCCTCCCTGGGAAGGAAAGACAGGATTCTGTATACAGC GGTCTTCAGGAGATAGATCCTAGCTCCGAGCTTGTCTGCATCCATGATTCTGCTAGACCTCTGGTTTCACCTGCTGATATAAGGAAGGTAATCAAGGATG CATCAGTTAATGGAGCAGCTGTGCTGGGTGTTCCTGTCAAAGCCACTATCAAGGAGGCAGATAGTGAATCATTCGTGGTAAAAACTCTTGACCGCAAGAC ACTGTGGGAGATGCAAACGCCGCAGGTGATCAAGCCAGAAGTGCTCAAGAGAGGATTTGAGCTTGTGAATAGGGAAGGCCTTGAGGTGACGGATGATGTC TCAATAGTGGAGCATCTGAAACATCCTGTTTTCGTCACGGAAGGATCGTACACTAACATCAAGGTTACAACCCCGGATGATTTGCTGCTTGCGGAGAGGA TTCTGACTATGGATTGA
AA sequence Show only first row Show all	>Lus10042400 pacid=23153508 polypeptide=Lus10042400 locus=Lus10042400.g ID=Lus10042400.BGIv1.0 annot-version=v1.0 MWLKKAETNESVLGKKKNKVNEETQIDDELRTQECWVNAASLSMKIALSSSSSSSSTIPVLRHAAAFTLQSVSSTSYRNRKSNLIRVMAKSKKPSSSHTP SQGSSDPPPRITSNVKQNLQFLKLWKELEKRRSSTPRPATSYRRKKVEKEIVPVDTQEIYRDPTFTLYHTNHMPNTAFPVLLVDGYNVCGYWIKLKKHFM SGRLDIARQKLVNELIAFSVHKEVKVVVVFDAMMSGLPTHKETFACVDIIYSGETCADSWIEREVMCLRQDGCPKVWVVTSDHKQQDAAHGAGAFVWSCK ALVSEIKAAQKEVDMMIQEQRPTSFQGKLLKHNLNSEVVGALKDLRNKLYENERKKQVSKALTFLFSSLLLVLVSFPPFSGCKIIATQKPRFALSPIRCS ATPLQNGSGAVKERSVSVILLAGGQGKRMGAGMPKQYLPLLGQSIALYSFYTFSGMIEVKEIVVVCDPSYSDVFEDAEEEIDIDLKFALPGKERQDSVYS GLQEIDPSSELVCIHDSARPLVSPADIRKVIKDASVNGAAVLGVPVKATIKEADSESFVVKTLDRKTLWEMQTPQVIKPEVLKRGFELVNREGLEVTDDV SIVEHLKHPVFVTEGSYTNIKVTTPDDLLLAERILTMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02410			unknown protein		Lus10042400 [exp]	0	1
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	1.7	0.8597
AT5G50090			unknown protein		Lus10004229 [exp]	2.0	0.8901
AT1G28100			unknown protein		Lus10001800 [exp]	3.6	0.8256
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	8.5	0.8661
					Lus10032893 [exp]	9.9	0.8025
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	11.6	0.7846
AT1G28100			unknown protein		Lus10002573 [exp]	17.5	0.8168
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	19.4	0.8176
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	19.4	0.8295
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	23.2	0.8054

Compare expression of checked genes

Lus10042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.