Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02470 323 / 2e-112 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 301 / 4e-104 Alfin AL7 alfin-like 7 (.1) AT5G20510 264 / 5e-89 Alfin AL5 alfin-like 5 (.1) AT3G42790 263 / 1e-88 Alfin AL3 alfin-like 3 (.1) AT5G26210 223 / 5e-73 Alfin AL4 alfin-like 4 (.1) AT5G05610 219 / 1e-71 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 205 / 4e-66 Alfin AL2 alfin-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026268 [exp] 395 / 4e-141 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10026269 [exp] 393 / 5e-140 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10042404 [exp] 307 / 3e-107 AT2G02470 255 / 6e-87 alfin-like 6 (.1.2) Lus10015637 [exp] 256 / 5e-86 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10005035 [exp] 221 / 2e-72 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10028280 [exp] 218 / 2e-71 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10014843 [exp] 216 / 2e-70 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 216 / 2e-70 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10040207 [exp] 211 / 5e-69 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044700 [exp] 368 / 3e-130 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 363 / 2e-128 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.006G223500 [exp] 271 / 4e-92 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.018G050200 [exp] 271 / 8e-92 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G145300 [exp] 256 / 2e-86 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.010G188100 [exp] 224 / 8e-74 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 220 / 3e-72 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.006G100900 [exp] 218 / 4e-71 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.016G116900 [exp] 210 / 3e-68 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.009G121000 [exp] 42 / 0.0002 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10042402 pacid=23153671 polypeptide=Lus10042402 locus=Lus10042402.g ID=Lus10042402.BGIv1.0 annot-version=v1.0 ATGGAGGGGATACCGCACCCAGTACCTCGAACTGTAGAAGAGGTCTTTAGCGACTTCAAAGGCAGACGCGCTGGATTGATCAAGGCTCTCACTATGGAAA AGGAGAACCTGTGTCTTTATGGACTTCCAAATGAGAACTGGGAAGTTAATTTGCCTGTTGAGGAAGTACCGCCTGAGCTTCCTGAGCCTGCATTAGGCAT TAATTTTGCCAGAGATGGGATGCAAGAGAAGGATTGGTTGTCACTTGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCCTTTTACTTTGGAGCA CGTTTTGGGTTTGGTAAGAACGAAAGGAAGAGACTTTTTCAGATGATAAATGAAGTCCCCACAATATTTGAAGTAGTGTCTGGAAATGCTAAGCAACCTA AAGATCATTCTGCAACGCATAACAACAGCGGTAAAAGCAAATCAAGTGCAAAGATGCAATCTCGGCACCCGGAACCCCTTACAAAGACGGTGAAGATGTC TCCACCACCACCGAAGGAGGAAGATGAGAGCGGGGAAGAGGATGAAGAGGATGATGAACAAGGTGCAACGTGTGGGGCATGTGGTGAAAGCTATGGAACT GACGAATTCTGGATCTGCTGCGATATATGTGAGAGATGGTTTCACGGGAAATGCGTGAAGATTACACCAGCAAAGGCGGAGCACATCAAGCAGTATAAAT GCCCAGGGTGCAGTGGCAAGAGGGCAAGAGTTTAG
AA sequence Show only first row Show all	>Lus10042402 pacid=23153671 polypeptide=Lus10042402 locus=Lus10042402.g ID=Lus10042402.BGIv1.0 annot-version=v1.0 MEGIPHPVPRTVEEVFSDFKGRRAGLIKALTMEKENLCLYGLPNENWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGA RFGFGKNERKRLFQMINEVPTIFEVVSGNAKQPKDHSATHNNSGKSKSSAKMQSRHPEPLTKTVKMSPPPPKEEDESGEEDEEDDEQGATCGACGESYGT DEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPGCSGKRARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042402 [exp]	0	1
AT4G36970			Remorin family protein (.1)		Lus10039007 [exp]	5.4	0.8188
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	12.7	0.7672
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	16.3	0.8100
AT5G66580			unknown protein		Lus10000739 [exp]	35.5	0.7633
AT3G56720			unknown protein		Lus10027280 [exp]	35.9	0.7297
					Lus10017551 [exp]	54.1	0.7992
					Lus10010480 [exp]	56.3	0.7980
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	57.4	0.7944
AT1G73120			unknown protein		Lus10022961 [exp]	62.0	0.7910
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10006598 [exp]	66.6	0.7034

Compare expression of checked genes

Lus10042402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.