Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02330 285 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026267 [exp] 390 / 5e-137 AT1G02330 358 / 5e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110200 [exp] 296 / 2e-100 AT1G02330 336 / 1e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07052 [flax] [poplar] Hep_59 Hepatocellular carcinoma-associated antigen 59
Representative CDS sequence Show only first row Show all	>Lus10042403 pacid=23153879 polypeptide=Lus10042403 locus=Lus10042403.g ID=Lus10042403.BGIv1.0 annot-version=v1.0 ATGCAGAATAAGAAGAACAAGAATTTCAGGAAGAGGGCTTTTCCAGAAGAGGAGGAAGGAGAATCCGGAAACCGTCAACCTAGCAATCCCAACAGCAGCT TATCAGACAACGATGACGATGAAGAAAGGAGATTGGCATTAGAAGAAGTCAAATTCCTTCAGAAACAGCGACAGAGGAAATATGGAATCCCTGCGCTTCC CTCGTCCCAATCCCTGTCCTCCTCATTATCCAAGAAACTAGCTGATAGTAACGACGCTGCAGCCGCCGCAGCTGCTGCTTCCGCCGGAGGAGGAGATGGG GAAAAGGAGGAGCTCGTCCTTCAAGACACCTTCGCTCAAGAAACTGCCGTTATGGTTGAAGACCCCAACATGTTGAAGTATGTTGAGCAGGAATTAGCTA AGAAAAGAGGAAAGAACGTTGACACGGAAGCTCAAGTTGAGAATGAGTTAAAGCAGGCTGAGGATGAACTATACAAAATCCCTGAACATCTTAAAGTTAA AAAGCGTAACTCAGAAGAGAGCTCTACTCAATGGACTACAGGCATTGCGGAAGTTCAGTTGCCAATTGAATATAAGCTGAAAAACATTGAAGAAACAGAA GCAGCCAAGAAGCTATTGCAGGAGAAGAGGTTGATGGGAAGAGCAAAATCTGACTTTAATATCCCATCCAGTTACAGTGCTGATTATTTCCAGCGCGGCA GAGATTACGCCGAGAAACTCCGAAGAGAACATCCAGAGTTGTACAACAAGGAAGGGAAGTCGTCAAAGGAGGATGGAGGTGTATCCAAACCTACTGCAGA TAACAATAATACAGAAGCAGGAGCAGCAGCTCGCAGGGAAGCTGCAACGGATCAGATAATGCTAGAACGATTTAGAAAACGGGAGCGTAATCGTGTTATG CGGAGATGA
AA sequence Show only first row Show all	>Lus10042403 pacid=23153879 polypeptide=Lus10042403 locus=Lus10042403.g ID=Lus10042403.BGIv1.0 annot-version=v1.0 MQNKKNKNFRKRAFPEEEEGESGNRQPSNPNSSLSDNDDDEERRLALEEVKFLQKQRQRKYGIPALPSSQSLSSSLSKKLADSNDAAAAAAAASAGGGDG EKEELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNVDTEAQVENELKQAEDELYKIPEHLKVKKRNSEESSTQWTTGIAEVQLPIEYKLKNIEETE AAKKLLQEKRLMGRAKSDFNIPSSYSADYFQRGRDYAEKLRREHPELYNKEGKSSKEDGGVSKPTADNNNTEAGAAARREAATDQIMLERFRKRERNRVM RR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02330			unknown protein		Lus10042403 [exp]	0	1
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	3.9	0.8191
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	4.9	0.8068
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	7.3	0.8068
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	9.6	0.7977
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	14.8	0.7534
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	15.3	0.7809
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	16.7	0.7670
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	18.2	0.7738
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	18.2	0.7435
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	20.0	0.7788

Compare expression of checked genes

Lus10042403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.