Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02470 243 / 3e-82 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 224 / 2e-74 Alfin AL7 alfin-like 7 (.1) AT3G42790 201 / 8e-66 Alfin AL3 alfin-like 3 (.1) AT5G20510 198 / 2e-64 Alfin AL5 alfin-like 5 (.1) AT3G11200 170 / 1e-53 Alfin AL2 alfin-like 2 (.1.2) AT5G05610 168 / 9e-53 Alfin AL1 alfin-like 1 (.1.2) AT5G26210 163 / 9e-51 Alfin AL4 alfin-like 4 (.1) AT5G09790 39 / 0.0007 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G52100 39 / 0.0008 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042402 [exp] 307 / 1e-107 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2) Lus10026269 [exp] 304 / 3e-106 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10026268 [exp] 304 / 5e-106 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10015637 [exp] 196 / 9e-64 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10037655 [exp] 178 / 6e-56 AT5G20510 288 / 2e-97 alfin-like 5 (.1) Lus10005035 [exp] 170 / 1e-53 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10028280 [exp] 168 / 1e-52 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10027805 [exp] 167 / 1e-51 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10014843 [exp] 165 / 1e-51 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044700 [exp] 283 / 5e-98 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 279 / 3e-96 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.018G050200 [exp] 208 / 2e-68 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 206 / 8e-68 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.006G145300 [exp] 194 / 5e-63 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.010G188100 [exp] 173 / 6e-55 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 168 / 5e-53 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.006G100900 [exp] 167 / 2e-52 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.016G116900 [exp] 163 / 5e-51 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.009G121000 [exp] 41 / 0.0001 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10042404 pacid=23153767 polypeptide=Lus10042404 locus=Lus10042404.g ID=Lus10042404.BGIv1.0 annot-version=v1.0 ATGCAAGAGAAGGATTGGTTGTCACTTGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCCTTTTACTTTGGAGCACGTTTTGGGTTTGGTAAGA ACGAAAGGAAGAGACTTTTTCAGATGATAAATGAAGTCCCCACAATATTTGAAGTAGTGTCAGGAAACGCTAAGCAACCTAAAGACCATTCTGCAACGCA TAACAACAGCAGTAAAAGCAAATTAAGTGCGAAGATGCAATCTCGGCACCCGGAACCCCTTACAAAGATGGTAAAGATGTCTCCACCACCACCGAAGGAG GAAGATGAGAGCGGGGAAGAGGATGAAGAGGATGATGAACAAGGTGCAACGTGTGGGGCATGTGGTGAAAGCTATGGAACTGACGAATTCTGGATCTGCT GCGATATATGTGAGAGATGGTTTCACGGGAAATGCGTGAAGATTACACCAGCAAAGGCGGAGCACATCAAGCAGTATAAATGCCCAGGGTGCAGTGGCAA GAGGGCAAGAGTTTAG
AA sequence Show only first row Show all	>Lus10042404 pacid=23153767 polypeptide=Lus10042404 locus=Lus10042404.g ID=Lus10042404.BGIv1.0 annot-version=v1.0 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINEVPTIFEVVSGNAKQPKDHSATHNNSSKSKLSAKMQSRHPEPLTKMVKMSPPPPKE EDESGEEDEEDDEQGATCGACGESYGTDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPGCSGKRARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	0	1
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	2.0	0.8428
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	2.8	0.8505
					Lus10012012 [exp]	4.9	0.8211
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	4.9	0.8409
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	5.5	0.7712
					Lus10016269 [exp]	7.1	0.8175
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	13.3	0.7965
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	14.7	0.8045
AT4G22320			unknown protein		Lus10032566 [exp]	15.9	0.7988
AT2G30530			unknown protein		Lus10034444 [exp]	16.5	0.7517

Compare expression of checked genes

Lus10042404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.