Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10220 376 / 1e-133 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026266 [exp] 488 / 1e-177 AT3G10220 378 / 2e-134 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10003518 [exp] 59 / 1e-09 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10002949 [exp] 56 / 6e-09 AT1G71440 503 / 2e-176 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041400 [exp] 405 / 3e-145 AT3G10220 388 / 3e-138 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Potri.019G072700 [exp] 53 / 8e-08 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF01302 [flax] [poplar] CAP_GLY CAP-Gly domain
Representative CDS sequence Show only first row Show all	>Lus10042405 pacid=23154017 polypeptide=Lus10042405 locus=Lus10042405.g ID=Lus10042405.BGIv1.0 annot-version=v1.0 ATGGCGCCTCGGTTTCAGATCGAGGAAGGTGATTCAGTTCTCCTCCGTGTCACTCATGCCAATCTCAAAACCTTCGCTACTGAAGTCCGCTTCTCACGTC AGTCAACAATAGAAGCAGTGAAGGACAAGTTGTGGAGGAAATGCGGGACTTCTGTCAATTCAATGTCCTTGGAGCTTTATGATGATGCTAACACCAAAGT TGCTCATTTGAATGATCCCTCTTCTCCTCTAGGTTTTTACTCTCCTGTTGACGGGTTCCGGATTAACATTATAGATCTCGACCCATCATCAGTAACTTCT GGTGGCTGGTTGGAAGACACCTCATTGGTGGAGAAGTACACGATTTCCGATGAGGCATATGATAAACTTGATGGAACTTTCAGGAAATTCAAAGGAAAAA TGGTGTCTCAAAATCCATCAGCCTTTGAGCCCAAGATAACAGACAACTATATGGAAGAAGTATGTGCAGATATGAAGGTAGGAGATAGATGTGAAGTTCA ACCTGGGGAGAAACGTGGGGTTGTCAAGTTTGTTGGTCGAGCTGAACCTCTTGGACCGGGCTTTTGGGTTGGAGTTCAGTATGATGAGCCATTGGGGAAA CACGATGGCATGGTGAAAGGGACCCGATATTTTGAATGTCCTTCTCTTCATGGTGCCATAGTGAGGCCAGACAAAGTAAAGGTGGGTGACTATCCCGAAA GAGATCCCTTCGAAGATGAAGAAATATGA
AA sequence Show only first row Show all	>Lus10042405 pacid=23154017 polypeptide=Lus10042405 locus=Lus10042405.g ID=Lus10042405.BGIv1.0 annot-version=v1.0 MAPRFQIEEGDSVLLRVTHANLKTFATEVRFSRQSTIEAVKDKLWRKCGTSVNSMSLELYDDANTKVAHLNDPSSPLGFYSPVDGFRINIIDLDPSSVTS GGWLEDTSLVEKYTISDEAYDKLDGTFRKFKGKMVSQNPSAFEPKITDNYMEEVCADMKVGDRCEVQPGEKRGVVKFVGRAEPLGPGFWVGVQYDEPLGK HDGMVKGTRYFECPSLHGAIVRPDKVKVGDYPERDPFEDEEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10042405 [exp]	0	1
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	5.5	0.9066
AT3G15380			Plasma-membrane choline transp...		Lus10035837 [exp]	8.5	0.8840
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	13.1	0.8914
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	16.7	0.8776
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	18.7	0.8817
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	29.9	0.8828
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	30.5	0.8596
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10027343 [exp]	31.9	0.7915
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	32.9	0.8711
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10007782 [exp]	34.2	0.8782

Compare expression of checked genes

Lus10042405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.