Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31690 126 / 1e-32 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31640 119 / 1e-30 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31680 119 / 6e-30 B3 REM8 Transcriptional factor B3 family protein (.1) AT2G24700 118 / 2e-29 B3 REM10 Transcriptional factor B3 family protein (.1) AT1G26680 113 / 2e-27 B3 REM17 transcriptional factor B3 family protein (.1) AT4G31660 102 / 3e-25 B3 REM7 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 102 / 5e-24 B3 REM6 Transcriptional factor B3 family protein (.1) AT2G24645 99 / 1e-22 Transcriptional factor B3 family protein (.1) AT4G00260 97 / 4e-22 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT5G32460 82 / 5e-17 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026265 [exp] 401 / 2e-139 AT4G31650 154 / 6e-41 Transcriptional factor B3 family protein (.1) Lus10026264 [exp] 311 / 1e-103 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1) Lus10026234 [exp] 152 / 5e-42 AT1G26680 152 / 8e-40 transcriptional factor B3 family protein (.1) Lus10016285 [exp] 64 / 6e-11 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 63 / 7e-11 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 61 / 3e-10 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10026921 [exp] 57 / 5e-09 AT1G26680 90 / 2e-19 transcriptional factor B3 family protein (.1) Lus10010080 [exp] 56 / 1e-08 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10032873 [exp] 56 / 2e-08 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 69 / 6e-13 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 64 / 3e-11 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 59 / 2e-09 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.012G093200 [exp] 56 / 1e-08 AT3G18960 62 / 2e-11 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 56 / 1e-08 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 55 / 3e-08 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 54 / 8e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 45 / 2e-05 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 42 / 0.0003 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 41 / 0.0005 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10042406 pacid=23154003 polypeptide=Lus10042406 locus=Lus10042406.g ID=Lus10042406.BGIv1.0 annot-version=v1.0 ATGGCGGATGGAAACCCACATTTCTTTCGCCCACTCCTTCCTGGATTTGAGCACCGACTTGCAATTCCAGTGGCATTCTCTAAGTACTTGGATGACGGGG AAGCTGCTGTGCTGAGAAGCTCCAGTGGGAAATGTTATCCAGTGAACATCAGCTGCAGAGATTTCAAAGATGAAGGATGGAAAGAGTTTGTTGCCGATCA CAGCTTGCATGTCGGCGATTTCCTGGTCTTCAGATATACTAATACTCACAAGGTGTTCGACGTAATGGCGTTCGATCCAAGTGCCTGTGAATTTCAGTAC CCTCCTTCATTTTCCTCTCCCGCGTTTCATGCTTCTGTCGGAACAGAGCATACTAATGAAGAAGCACTTGAAAATGGAAGAGATCATCCTAGACCAACAT ACGGGAAGGACCAAGTGAAGGAGAAAGGTGGTTTTTACGTGCTGAAAAGCCCTTCCTTTGTGGTAACTATAAGGAGCGGTAACCTAGAAAAGAAGAACCT GCATATCCCTAAAGCCTTCGCGAGGAATAATGATCTGGAATGGATAGGCCCTCGAAGTGTGATTCTTTTGAATGAAGAAGGAAAGTCATGGCAAGCAGAC TTAATTGGTTACAAGAAGATTAGCCACTCTAAGCTTGGTAGGCAAGCAGTTCTTAACAGAGGAATCAACCGATTCCTGGAGGAAAACAGGCTGAAGCTGG GAGATACTTTCAGTTTGGGACTTGTTCAAGGTGGCAAAAACCCTGTATTCAAAATGTCTGGTGTAACATGCGCCATGACCCTCAGAAATTATAGAGGAAG TTGCTACTCGGCGATATTAAAGTCCATTAAGGACCGTGCAGCCTGCATTGGAAGTGGCTGGAAGGAAGTAGTAAAGGAAAATGGTATACAGGAGGGGGAT ATCTTGATGTTCGAACTCGTTGAAACTGGAACCAAACCAGTCATGACATTTAAGGTAGTTTTGCAGGAAGAAATCAGGGTCAAAGAAGAGGAGGGATGTG TGATGTCTACTTGTTAG
AA sequence Show only first row Show all	>Lus10042406 pacid=23154003 polypeptide=Lus10042406 locus=Lus10042406.g ID=Lus10042406.BGIv1.0 annot-version=v1.0 MADGNPHFFRPLLPGFEHRLAIPVAFSKYLDDGEAAVLRSSSGKCYPVNISCRDFKDEGWKEFVADHSLHVGDFLVFRYTNTHKVFDVMAFDPSACEFQY PPSFSSPAFHASVGTEHTNEEALENGRDHPRPTYGKDQVKEKGGFYVLKSPSFVVTIRSGNLEKKNLHIPKAFARNNDLEWIGPRSVILLNEEGKSWQAD LIGYKKISHSKLGRQAVLNRGINRFLEENRLKLGDTFSLGLVQGGKNPVFKMSGVTCAMTLRNYRGSCYSAILKSIKDRAACIGSGWKEVVKENGIQEGD ILMFELVETGTKPVMTFKVVLQEEIRVKEEEGCVMSTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	1.0	0.9436
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	3.0	0.8966
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10036567 [exp]	4.5	0.8846
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	4.7	0.8641
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	4.9	0.8976
					Lus10022823 [exp]	6.3	0.8782
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	6.6	0.8930
AT1G74160			unknown protein		Lus10021148 [exp]	8.4	0.8784
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	8.5	0.8673
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	9.2	0.8486

Compare expression of checked genes

Lus10042406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.