Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49810 1555 / 0 MMT methionine S-methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026263 [exp] 2145 / 0 AT5G49810 1551 / 0.0 methionine S-methyltransferase (.1) Lus10038132 [exp] 256 / 3e-76 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229800 [exp] 1735 / 0 AT5G49810 1553 / 0.0 methionine S-methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10042407 pacid=23153935 polypeptide=Lus10042407 locus=Lus10042407.g ID=Lus10042407.BGIv1.0 annot-version=v1.0 ATGGCGCCTTCCATCGATGACTTCCTGGAACAGTGCGAGCATTCCGGCGACTCCGCCTACTCTGCCCTCCGCTCTCTGCTGGAGCGCCTGGAGGATCCCG CCACAAGGGTTCACTCTCGGATTTTCCTCTCCGATCTATACAAGCGCGTCGGCGACTCCGATCAGTGCCTCACCCGATACCACTTCCGTATTCAAGACGT CCTCCTCCAGCACGATGCTGATCAAGGGAGAAAGAAATTAAAAATGATGGTTATACCAAGCATCTTTCTTCCTGAGGACTGGTCCTTCACCTTCTATGAA GGGCTGAATAGACACCCTGACTCTATTTTCAAGGATAGGACAGTAGCGGAGCTTGGTTGTGGGAATGGATGGATATCTATTGCAATTGCTGACAAGTGGT TGCCCTCAAAAGTATACGGCCTTGATATTAATCCAAGAGCTATAAAGGTTTCCTGGATAAACCTGTACTTAAATGCATTAGATGATGAAGGCCAACCAAT CTATGATGCAGAAAAGAAAACTTTGCTGGACAGGGTGGAGTTTTACGAATCTGATCTACTATCTCATTGTAGAGATAATGATATTCAACTTGAGCGAATT ATTGGGTGCATACCTCAGATTTTAAACCCAAACCCAGATGCAATGTCTAAATTGATCACAGAAAATGCAAGTGAAGACTTTTTGTATGATTTGAGTAACT ATTGTGCTCTTCAGGGATTTGTTGAAGATCAGTTTGGCCTAGGTCTGATTGCTAGGGCAGTTGAGGAAGGAATTGATGTCATTAAACCTTTGGGGATTAT GATCTTTAACATGGGTGGCCGTCCAGGACAAGCTGTTTGTAAGCGTTTGTTTGAGCGCCGTGGTTTCAATATCAATAAGCTTTGGCAGACAAAAGCTTCA GATACAGATATTACCGCTTTAGTTGAAATTGAGAAGAACAGTCCTCATCGTTTTGAGTTCTTCATGGGGATTACTGGTGATCAGCCTATTTGTGCGCGAA CAGCATGGGCGTATGGTAAAGCCGGCGGTCGTATTGCTCATGCGTTGTCAGTTTACAGTTGTCAATTGCGTCAGCCACAACAGGTCAAGAAAATTTTCAA GTTTCTTAGGAATGGTTTCCATGATGTGGGTAGCTCGTTGGATTTGTCTTTTGAAGATGATGCTGTTGCAGATGAGAAGATACCATTCCTCGGTTATCTT GCCGGAGAATTGAAGGAGAATTCAATTTTTCCATATGAGCCACCAGCTGGGAGCATGCAGTTCCGCAATCTCATTGCCGGCTTTATAAAAACATACCACC ATATTCCACTGAAGTCCAATAATGTTGTGATCTTTCCCTCAAGGGCTGTGGCAATTGAACATTTCCTTCGACTATTTTCACCTCGTCTAGCAGTTGTTGA TGAATACTTGACTCGTCATCTTCCTCGACAATGGTTAACATCTTTAGTAATCGAGGGTGCGGAGAATGGCAGCGGATCAAAAGACACAATTACTGTGATT GAAGCACCGAGGCAGTCTGATCTAATGGTAGAACTGATAACCAAGCTAAAGCCACAAGTGGTAATTACAGGGATTGCTCAGTTTGAAGATGTCACTAGTT CTGCCTTTGTACACCTTTTAGATGTTACCAGACAAATTGGGTCTCGGCTTTTCTTGGACATATCTGATCAGTTTGAGCTGTCAAGCCTTCCAAGTACCAA TGGGGTACTAAAATACCTTGCAGGAAATGTGTTGCCATCGCATGCTGCAATCGTCTGCGGCCTTGTGAAAAACAAGGTTTATTCAGATTTAGAAGTTGCT TTTGTCATCTCAGAAGAAGAGGCCATCTTCAAGGCATTGTCCAAAACAGTGGAAGTACTAGAGGGGAATACTACGCCAATTAGGCAATATTACTATGGTT GCCTTTTCCATGAGCTTCTGGCATTTCAGCTTGCAGATCGTCATCCATCTATAGAGAGGGTTAATGAGAAAGCCAAATCAGCTGAGTTGATAGGGTTTTC AAGTTCAGCAATCTCCGTTCTTGATAATTCCGAGATGTCAATTGGCGAGAATGAGAAGTCGTCCTTGATTCACATGGATGTAGACCAAAGCTTCTTGCCT ACTCCAGCAGCTGTCAAGGCCTCAATCTTTGAAAGCTTTGCAAGACAGAACATGACAGAGGCTGAAGTTGATGTTAGTCCTAGCATCAAACAATTCGTTA AAAGTAACTACGGACTTCTAACTGACAGCTCTTCAGAGTTTATTTATACGGACAGCACACAAGGTATTCTCAATAGGTTGATCCTCTGCTGCAATCAAGA AGGTGGGACATTATGCTTTCCATCTGGCTCGAACGGTAACCACATTTCTTCTGCCAAGTTTCTGAAAGCAAGCCTCGTCACCATCCCCACTGAGGGCTTC AAGCTGACCGGCGAACAGCTCAACAAAGTACTCGAGTCGGTCAAGAAGCCATGGGTATACATTTGTGGTCCTACAACGAATCCAGCAGGATTGATCTACA GTAATAAAGAGATGGATAGTATATTAACCACTTGTGCCAAATTCGGGGCAAGGGTTATCATTGATACTTCATTCTCAGGATTGGAATTTGATCAAGGTTG GGGTGGATGGAATTTGGATTCCATTTTATCAAAGGTCACTTCCCCTTCTTTTTGCGTCTCCCTTTTTGGAGGAATGTCTCTGAAGATGTTCAGTGGTGCA CTGAGATTCGGGTTTCTGATTTTGAACAACCCCGAGTTGGCCGATTCGTTTCATGGTTTTCCCGGATTGAGTAAGCCTCACGTCACAATGAGGTATGCTG TAAAGAAATTACTTGGTCTAAACGAGCAGAAAGTTGGGGAGCTGACAAACGCAGTTGCTGAAAATACAAAAACTCTGAAATCCAGAGCTCAGCGCCTGAA AGAGACACTAGAGAAATACGGGTGGGAGGTGGTGGAGCCTCAAGGTGGCATTTCCCTGGTGGCAAAGCCCTCAGTGTATCTGAACAAGGAAGTGAATATC AACGATGGCAAGAAGGTTAAGCTGAATGACTCCAACATCAGGGACGCCATTTTGCAGCGCACGGGGCTATGCATCAACAGTGCCAAGTGGACAGGGGTCC CTGAGTATTGCCGCTTCACAACAGCGCTTTCAGACAGTGAATTTGAGAGAGCATTGGATTGCATCAGGACGTTCAAAGATGCCCTCAACGGCTGA
AA sequence Show only first row Show all	>Lus10042407 pacid=23153935 polypeptide=Lus10042407 locus=Lus10042407.g ID=Lus10042407.BGIv1.0 annot-version=v1.0 MAPSIDDFLEQCEHSGDSAYSALRSLLERLEDPATRVHSRIFLSDLYKRVGDSDQCLTRYHFRIQDVLLQHDADQGRKKLKMMVIPSIFLPEDWSFTFYE GLNRHPDSIFKDRTVAELGCGNGWISIAIADKWLPSKVYGLDINPRAIKVSWINLYLNALDDEGQPIYDAEKKTLLDRVEFYESDLLSHCRDNDIQLERI IGCIPQILNPNPDAMSKLITENASEDFLYDLSNYCALQGFVEDQFGLGLIARAVEEGIDVIKPLGIMIFNMGGRPGQAVCKRLFERRGFNINKLWQTKAS DTDITALVEIEKNSPHRFEFFMGITGDQPICARTAWAYGKAGGRIAHALSVYSCQLRQPQQVKKIFKFLRNGFHDVGSSLDLSFEDDAVADEKIPFLGYL AGELKENSIFPYEPPAGSMQFRNLIAGFIKTYHHIPLKSNNVVIFPSRAVAIEHFLRLFSPRLAVVDEYLTRHLPRQWLTSLVIEGAENGSGSKDTITVI EAPRQSDLMVELITKLKPQVVITGIAQFEDVTSSAFVHLLDVTRQIGSRLFLDISDQFELSSLPSTNGVLKYLAGNVLPSHAAIVCGLVKNKVYSDLEVA FVISEEEAIFKALSKTVEVLEGNTTPIRQYYYGCLFHELLAFQLADRHPSIERVNEKAKSAELIGFSSSAISVLDNSEMSIGENEKSSLIHMDVDQSFLP TPAAVKASIFESFARQNMTEAEVDVSPSIKQFVKSNYGLLTDSSSEFIYTDSTQGILNRLILCCNQEGGTLCFPSGSNGNHISSAKFLKASLVTIPTEGF KLTGEQLNKVLESVKKPWVYICGPTTNPAGLIYSNKEMDSILTTCAKFGARVIIDTSFSGLEFDQGWGGWNLDSILSKVTSPSFCVSLFGGMSLKMFSGA LRFGFLILNNPELADSFHGFPGLSKPHVTMRYAVKKLLGLNEQKVGELTNAVAENTKTLKSRAQRLKETLEKYGWEVVEPQGGISLVAKPSVYLNKEVNI NDGKKVKLNDSNIRDAILQRTGLCINSAKWTGVPEYCRFTTALSDSEFERALDCIRTFKDALNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49810		MMT	methionine S-methyltransferase...		Lus10042407 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	6.5	0.8710
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	7.1	0.8793
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	10.3	0.8768
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	11.5	0.8576
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	14.8	0.8676
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10020701 [exp]	16.9	0.8538
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	19.4	0.8586
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	21.0	0.8499
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	21.7	0.8431
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	21.8	0.8396

Compare expression of checked genes

Lus10042407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.