Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10250 155 / 7e-48 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G07400 135 / 7e-41 HSP20-like chaperones superfamily protein (.1) AT1G59860 134 / 2e-40 HSP20-like chaperones superfamily protein (.1) AT1G53540 126 / 3e-37 HSP20-like chaperones superfamily protein (.1) AT5G59720 113 / 4e-32 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT2G29500 110 / 6e-31 HSP20-like chaperones superfamily protein (.1) AT3G46230 108 / 3e-30 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G12020 97 / 8e-26 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 91 / 4e-23 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 84 / 5e-21 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026262 [exp] 358 / 7e-128 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 160 / 1e-49 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 149 / 3e-45 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 119 / 2e-34 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 117 / 1e-33 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 115 / 6e-33 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 106 / 2e-29 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 105 / 9e-29 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 104 / 1e-28 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089200 [exp] 145 / 1e-43 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 130 / 7e-39 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 130 / 1e-38 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 127 / 1e-37 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 125 / 6e-37 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 125 / 9e-37 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 124 / 2e-36 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 124 / 2e-36 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 123 / 8e-36 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 120 / 6e-35 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10042408 pacid=23153569 polypeptide=Lus10042408 locus=Lus10042408.g ID=Lus10042408.BGIv1.0 annot-version=v1.0 ATGGCGGCCATCCCTACAATACTAGCAATCCTCATAAGCTTAATGGCAACACCTTCAGAATCCCTAATGCCTTACTCAAGGTCACTGTGGGATCACATGA TGATGCTACCAGAGGACCCATTTCGAATCTTGGAACAATCTCCACTCACCATTCCCAAAGGAATGGAGAGTACTACTACTCTGGCTCTGGCGAGTGCTGA CTGGAAAGAGACCCCCAAAGCACACTTGATCACCCTCGATATTCCTGGGATGAAGAAGGAGGACGTGAAGATCGAGGTGGAAGAGAACAGAGTGCTTCGG ATCAGCGGGGAGAGGAAATCGGAACAAGGAGTCGAAGGGGAAATCAAGTGGCACAGAGCTGAGAGGACTTCTGGAAAGTTCTGGAGGCAGTTCAGGCTTC CTGGGAATGCCGACTTGGATAAGGTGAAAGCTTCCCTGGAAGACGGAGTGCTTACTGTTACTGTGCCGAAGGTTGCTGAGGAGAATAAGAGGCGGGCTAA GGTTATCAGCATTGCCGCTGAGGGGGAGAAGCATTCCTCTGCTCAGGAGATTGAGGCTACCAAGGCTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10042408 pacid=23153569 polypeptide=Lus10042408 locus=Lus10042408.g ID=Lus10042408.BGIv1.0 annot-version=v1.0 MAAIPTILAILISLMATPSESLMPYSRSLWDHMMMLPEDPFRILEQSPLTIPKGMESTTTLALASADWKETPKAHLITLDIPGMKKEDVKIEVEENRVLR ISGERKSEQGVEGEIKWHRAERTSGKFWRQFRLPGNADLDKVKASLEDGVLTVTVPKVAEENKRRAKVISIAAEGEKHSSAQEIEATKAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	0	1
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	3.2	0.8995
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	4.2	0.8903
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	7.5	0.8268
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	7.7	0.8463
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	7.9	0.8868
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10026849 [exp]	9.4	0.7896
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	11.7	0.8127
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	14.3	0.8284
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	15.2	0.8339
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	22.6	0.7679

Compare expression of checked genes

Lus10042408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.