Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02560 1840 / 0 TIP120, HVE, ETA2, ATCAND1, CAND1 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026261 [exp] 2274 / 0 AT2G02560 1968 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000500 [exp] 2014 / 0 AT2G02560 1940 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) Potri.004G229300 [exp] 1996 / 0 AT2G02560 1913 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08623 [flax] [poplar] TIP120 TATA-binding protein interacting (TIP20) CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10042409 pacid=23153700 polypeptide=Lus10042409 locus=Lus10042409.g ID=Lus10042409.BGIv1.0 annot-version=v1.0 ATGGCGAACTTGCAATTGACTGGTATCCTGGAGAAGATGACCGGAAAAGACAAGGACTATAGATACATGGCTACTTCGGATCTGTTGAATGAGTTGAATA AGGAAGGATTCAAAGCTGATGCTGAAATGGAGACGAAATTGTCGAATATTGTCCTCCAGCAACTCGATGATGTTGCTGGTGATGTTTCTGGATTGGCGGT AAAATGTCTTGCCCCACTGGTGAAGAAAGTTAATGATGCACAGGTAGTTGAGATGACTGGCAAACTATGTGATAAGTTGCTAAATGGTAAAGATCAACAT CGTGACATTGCAAGCATAGCTCTGAAGACTATTATAGCTGAAGTCACTACTCAATCTCTTGCTCAATCAGTTCTTGTTGCTTTGACTCTACAATTGACAA GAGGAATAACTAGTCCAGGGATGGTCACAGATATAAAATGTGAATGTCTGGATATTTTGTGCGAAGTCCTCCACAAATTTGGAAATCTAATGGCAACAGA CCATGAGTTACTCCTTGGTGCTCTTTTGTCCCAATTAAACTTTAACCAAGCAAGTGTCAGAAAGAAGTCTGTTTCATGTGTCGCTTCTCTGGCTGCAAGT TTGTCCGATGACCTGTTGGCCAAGGCAACCGTTGAAGTTGTTCAGAAATTGAGAAGCAAGGGGGTGAAGCCTGAATTGACCAGAACAAATATTCAAATGA TTGGTGCTCTTAGCCGTGCTGTGGGATACCGCTTTGGACCCCATCTTGAAGATACCGTTCCTGTGCTTATTAATTACTGCACTAGTGCATCTGAGAATGA CGAGGAGCTCCGTGAATATAGCTTACAGGCACTAGAAAGTTTTCTGCTTAGATGCCCGCAAGACATTTCTTCGTATTGCGATCTTATTCTTCGTCTTGCT TTGGAGTACCTAAGCTATGATCCCAACTATACTGATAACATGGAGGAGGATACCGATGACGAGACCCATGAAGAAGAAGAAGATGATGAAAGTGCAAATG AATATACTGATGATGAGGATGTTAGCTGGAAAGTTCGAAGAGCAGCTGCTAAATGTTTGGCTGCATTAATTGTTTCTCGTCCTGAGCTACTGGCGAACCT ATATGAGGAGGCATGCCCAAAAATAATTGATAGATTCAAAGAGAGGGAAGAGAATGTGAAGATGGATGTCTTTAATACATTCATAGAGCTTCTACGTCAG ACCGGAAACGTGACAAAAGGGCAGACTGACATGGACGAATCAAGGCAAGTTCTTTGGTTGGAGTTTACTCCGAATGGCATAAATTGTTCTCTTGTGCCTG CGCGATGGCTATTGAAGCAAGAAGTCCCAAAGATTGTGAAGTCTATAATTAGACAGTTGCGTGAGAAATCTATCAAGACAAAGGTGGGTGCCTTTTCAGT TTTGAAAGAATTGGTGATTGTTTTGCCAGACTGTCTAGAAGAGCAAATCGGATCACTCATTCCAGGAATTGAAAAAGCACTAAATGACAAATCTTCCACC TCAAATTTGAAGATTGAAGCCCTTGTGTTTACAAGATTAGTGTTGGCTTCTCACTCACCACCTGTGTTCCATCCTTTTATCAAGGCTCTTTCTAGTCCTA TTTTATCTGCTGTTGGTGAACGGTATTACAAGGTTACAGCTGAGGCGTTAAGAGTATGTGGGGAACTTGTTCGTGTTCTGAGGCCTAATATTCAGGACCA CACATTTGACTTCCAACCTTATGTTTATCCAATATATAAAGCAATTATGTCACGTTTGACAAACCAAGATCAAGACCAGGAGGTCAAAGAGTGCGCTATT TCTTGCATGGGACTTGTCATCTCCAGATTTGGTGATTGCCTTAGAGCTGAGTTATCTGCTTGCTTACCTGTTCTTGTGGACAGGATGGGTAATGATTTGA ATTTTTTTAAATGCGTGGTATTAAGTGGCCCATTTGATGCATTTGCAGTCATTGCTACTTCTCCTCTACGGATTGATCTAGCATGTGTCTTGGAGCATGT GATTGGAGAGTTGACTGCGTTTCTGCGGAAGGCCAACAGGGCGCTGAGACAGGCAACTCTAGCAACTCTAAATTCTCTGGTGGTTGCTTATGGTGATATG ATTGGTGCATCTGCTTATGAAGTTATAATTGTGGAGCTTTCAACACTGATAAGTGATTTAGACTTGCACATGACGGCGCTTGCTCTTGAACTATGCTGCA CATTAATGGCTGACAGCAGGTCAAGTCAAAGTATAGACTTGGCTGTGAGAAATAAAGTTCTTCCTCAAGCATTGGTGTTGATCAAAAGTTCGTTGCTACA GGGTCAAGCCCTCATGGCTCTGCAGAACTTTTTTGCTGCTTTGGTTTATTCGGCGAATACAAGCTTCGATGTTTTATTGGACTCGCTTCTCTCTTGCGCC AAACCAACTCCTCAGTCCGGCGGTATTGCAAAACAGGCATTGCATTCAATAGGCCAGTGTGTGGCAGTTCTCTGCCTCGCTGCAGGTGATCAGAAATGTT CATCAACAGTTCGGATGCTTACAGAGATTCTCAAAGATGATAGCAGCACTAATTCTGCTAAGAAGCACCTCGCCTTGTTGTGCTTGGGGGAAATTGGGAG AAGGAAAGATTTAAGTGCTCATGCACATATCGAAACTATCATTATCGAATCTTTCCAGTCTCCTTTTGAGGAGATTAAGGCTGCTGCTTCCTATGCTCTG GGAAATATTGCTGTTGGCAATTTGTCGAAATATTTGCCTTTTATATTGGACCAGATTGATAATCAGCAGAAGAAACAATATCTTTTGCTTCATTCTTTGA AAGAGGTTATAGTGAGGCAATCAGTCGATAGGGCTGAGTTCCAGGATTCTAGCGTGGAAAAGATACTTAAGCTACTATTTAATCATTGTGAAAGCGAGGA AGAGGGTGTCCGAAATGTTGTAGCTGAATGCTTAGGCAAAATTGCTCTAATTGAACCAGTAAAACTCATCCCTGCGCTCAAGGTAAGAACAACTAGTCCG GCTGCTTTTACAAGAGCAACCGTGGTGATTGCTGTCAAATATTCTATAGTTGAGAGGCCAGAGAAGATAGATGAGATTATCTTCTCTGAGATATCGTCAT TTCTAATGCTCATCAGAGATGTTGACCGGCATGTTAGGCGTGCAGCTGTGTTGGCCTTGAGTACATTTGCTCATAATAAGCCCAACCTGATTAAAGGAAT TTTACCGGAACTATTGCCACTTCTCTATGATCAGACAGTAGTCAAGAAAGAATTGATACGGACTGTTGATCTCGGGCCTTTCAAGCACATTGTGGACGAT GGATTAGAGTTGAGGAAAGCTGCTTTTGAGTGTGTGGATACACTGTTAGACAGCTGTCTTGATCAAGTGAATCCATCATCCTTCATAATCCCTCACCTGA AATCTGGGCTGGAAGATCATTATGATGTAAAAATGCCTTGCCACCTAATTCTATCAAAACTAGCGGATAAATGTCCATCTGCTGTGCTGGCAGTACTGGA TTCACTGGTTGACCCTCTTCAAAAAACCATCAATTTCAAGCCAAAGCAAGATGCAGTGAAGCAAGAAGTAGACCGTAATGAAGACATGATCCGTAGTGCT TTACGAGCAATAGCTGCTCTGAATCGGATAAGTGGAGGTGAGTGCAGCCATAGATTCAAGAATCTGATGAGCGAGATCTCAAAATCAGCTACGCTGTGGG ATAAGTACTACTCCATCCGGAATGAGTGA
AA sequence Show only first row Show all	>Lus10042409 pacid=23153700 polypeptide=Lus10042409 locus=Lus10042409.g ID=Lus10042409.BGIv1.0 annot-version=v1.0 MANLQLTGILEKMTGKDKDYRYMATSDLLNELNKEGFKADAEMETKLSNIVLQQLDDVAGDVSGLAVKCLAPLVKKVNDAQVVEMTGKLCDKLLNGKDQH RDIASIALKTIIAEVTTQSLAQSVLVALTLQLTRGITSPGMVTDIKCECLDILCEVLHKFGNLMATDHELLLGALLSQLNFNQASVRKKSVSCVASLAAS LSDDLLAKATVEVVQKLRSKGVKPELTRTNIQMIGALSRAVGYRFGPHLEDTVPVLINYCTSASENDEELREYSLQALESFLLRCPQDISSYCDLILRLA LEYLSYDPNYTDNMEEDTDDETHEEEEDDESANEYTDDEDVSWKVRRAAAKCLAALIVSRPELLANLYEEACPKIIDRFKEREENVKMDVFNTFIELLRQ TGNVTKGQTDMDESRQVLWLEFTPNGINCSLVPARWLLKQEVPKIVKSIIRQLREKSIKTKVGAFSVLKELVIVLPDCLEEQIGSLIPGIEKALNDKSST SNLKIEALVFTRLVLASHSPPVFHPFIKALSSPILSAVGERYYKVTAEALRVCGELVRVLRPNIQDHTFDFQPYVYPIYKAIMSRLTNQDQDQEVKECAI SCMGLVISRFGDCLRAELSACLPVLVDRMGNDLNFFKCVVLSGPFDAFAVIATSPLRIDLACVLEHVIGELTAFLRKANRALRQATLATLNSLVVAYGDM IGASAYEVIIVELSTLISDLDLHMTALALELCCTLMADSRSSQSIDLAVRNKVLPQALVLIKSSLLQGQALMALQNFFAALVYSANTSFDVLLDSLLSCA KPTPQSGGIAKQALHSIGQCVAVLCLAAGDQKCSSTVRMLTEILKDDSSTNSAKKHLALLCLGEIGRRKDLSAHAHIETIIIESFQSPFEEIKAAASYAL GNIAVGNLSKYLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDRAEFQDSSVEKILKLLFNHCESEEEGVRNVVAECLGKIALIEPVKLIPALKVRTTSP AAFTRATVVIAVKYSIVERPEKIDEIIFSEISSFLMLIRDVDRHVRRAAVLALSTFAHNKPNLIKGILPELLPLLYDQTVVKKELIRTVDLGPFKHIVDD GLELRKAAFECVDTLLDSCLDQVNPSSFIIPHLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSA LRAIAALNRISGGECSHRFKNLMSEISKSATLWDKYYSIRNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	2.0	0.9180
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	4.9	0.8545
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	6.0	0.8676
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	8.5	0.8927
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	8.5	0.8864
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	9.9	0.8757
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	10.1	0.8887
					Lus10021411 [exp]	10.2	0.8700
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	14.4	0.8802
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	14.5	0.8858

Compare expression of checked genes

Lus10042409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.