Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48120 53 / 2e-07 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026259 [exp] 330 / 3e-113 ND 42 / 4e-04 Lus10001163 [exp] 62 / 1e-10 AT2G04865 347 / 3e-115 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012346 [exp] 47 / 1e-05 AT2G04865 347 / 1e-112 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006393 [exp] 44 / 0.0001 AT2G04865 331 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10042411 pacid=23153679 polypeptide=Lus10042411 locus=Lus10042411.g ID=Lus10042411.BGIv1.0 annot-version=v1.0 ATGGAGGTTGATAATCAAGCTGTTGCTGGATCATTAGACTGCACTGATATCACAGTACCAGTACCACGTCGCATTTCTAAGCGTCCAACTGCTAGAACAA GGGACATCAACAAACAAAAACCAGCAGAAGCAGCCAAAAGGGAAGGTGGTAGCACTGATGGCTTTTTGGATCCAGGGCCAATCGACAAATCGGTTCTTGT GCTGCAGGACCAGCATAGATCTGAAGCAATATGGAATGGACAATTATGGGCATGGGAGCATTGGCATTTTGGCCGTCCTGAGAAATTCAGTTCACCGATA CAGAATTCGTCTCCACCAGAATGCAAGGTAGCAGGGGAGGGGCTGTCAGTAGCAATGGCTGCTAGAGTCGACGGGGAATCATTATGTACAGGTCCATTAG GATGTAGGTGGAGGTCTCCCGTGATTCGTAGAGATAATCCGATCCGAACATTATTTCTATATCGAGATCAAATTGATCAACTAACAGAAGATCAGGTACA GAGCTTGACAAACATTCATTCCCGGTGCACCGCTGCTCTAAACTCTGCTTCAAGTGACAAGGTGTTGCCAACGTTGCATGAGATTCAGTCGGTGTGCAAC CGGGTACTGGAGTTGTTCGGTGAGACTCGTCGTCTCCAGGTAAGACCGACATCAGTTCCAGTTGGGGAGAATGCTATATGCACAATGTCACCATTTCTAG AAGCTCTGGACGGAGATTTACAGCCTAATTATGAGAAACCTGCTGCTATTTCGCACGAATCTTCGGTAAAAGCTAGATCAAAGAATCCGGCTATTAAAAG GCGAGGGAGAAGCAAAGATGATCATCATAGCCAGGCAGGAGGAACGGTAACAGGGGGACTCCAGGTTGAGGATGAAGTTAATGAATTAGAGTGCGTTAGT TCAGAAGTGTGTCCCGCAAGCAACCTCTTACCCGAGGGGGGGATAGTGGTGGAGTCAATTCGGAAGAAGTCACAAGAAACTAGAAACTCAATGTGA
AA sequence Show only first row Show all	>Lus10042411 pacid=23153679 polypeptide=Lus10042411 locus=Lus10042411.g ID=Lus10042411.BGIv1.0 annot-version=v1.0 MEVDNQAVAGSLDCTDITVPVPRRISKRPTARTRDINKQKPAEAAKREGGSTDGFLDPGPIDKSVLVLQDQHRSEAIWNGQLWAWEHWHFGRPEKFSSPI QNSSPPECKVAGEGLSVAMAARVDGESLCTGPLGCRWRSPVIRRDNPIRTLFLYRDQIDQLTEDQVQSLTNIHSRCTAALNSASSDKVLPTLHEIQSVCN RVLELFGETRRLQVRPTSVPVGENAICTMSPFLEALDGDLQPNYEKPAAISHESSVKARSKNPAIKRRGRSKDDHHSQAGGTVTGGLQVEDEVNELECVS SEVCPASNLLPEGGIVVESIRKKSQETRNSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10042411 [exp]	0	1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	9.2	0.7550
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	13.6	0.7546
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	20.8	0.6882
					Lus10037540 [exp]	22.9	0.7249
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	27.7	0.7209
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	28.0	0.7079
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	31.5	0.6616
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	37.0	0.7166
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	37.0	0.6678
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	39.7	0.6427

Compare expression of checked genes

Lus10042411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.