Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026258 [exp] 353 / 1e-125 ND / Lus10026257 [exp] 329 / 7e-116 ND / Lus10026194 [exp] 262 / 9e-90 ND / Lus10042472 [exp] 258 / 6e-88 ND / Lus10042413 [exp] 254 / 4e-84 ND / Lus10042473 [exp] 233 / 3e-76 ND / Lus10034839 [exp] 227 / 2e-75 ND / Lus10008920 [exp] 207 / 5e-68 ND / Lus10028894 [exp] 204 / 2e-66 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002400 [exp] 283 / 1e-97 ND / Potri.001G307000 [exp] 250 / 6e-85 ND / Potri.001G307100 [exp] 238 / 3e-80 ND / Potri.002G067000 [exp] 205 / 4e-67 ND / Potri.001G306932 [exp] 204 / 7e-67 ND / Potri.005G193200 [exp] 196 / 1e-63 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10042412 pacid=23153936 polypeptide=Lus10042412 locus=Lus10042412.g ID=Lus10042412.BGIv1.0 annot-version=v1.0 ATGGTGATGATGATGATCCAATCATCATCAGCTGCTAGTGCTGGTATTCCTACAACAGGATTCGTATCCCAGCCGTTCAACGAGTCCTTCTACCACATTC AGAGCCCTTACAACTTACCCGAAAGCCAACGTTACAGCTTCGTCGATGGAGTTCACAAGTGTTGGGTTTACTCCACTGACCTACCCCATACCCCGACCAG CCGTACTAAGCCACGTACCGAGGTCGCCATTCAGGGATATGGGTACAAGTCAGGTACTTGGCAATTCGAAGCGTATGGTTACGTGCCAAGTGGGACTTCA GGAGTGAGCATTATGCAAATATTTGGATCAAGGCCTCCAACAGCTACTTCCTTGATGCTCCATGTCTACGATGGCTCCCTCCGCTATTATAGCACTCGTC AAGTTGTGCTCCCAAACGTCTACAACAAGTGGTTTAAGTTGAACGTGATTGATGATTTTGATTCCGAGAAAATCAACGTTTACATCAATGACGAGCTCAA GTTAGAGGTTCAAGGCCGTGGTGGAAAATTTCACGCTTTCAAATGCGGTGTCTATGGGCAGCGAAATGAGTCCCATCTCATGGAGTCTCGCTGGAAAAAC ATTCGAATTTTAAAAAAAGTGTAG
AA sequence Show only first row Show all	>Lus10042412 pacid=23153936 polypeptide=Lus10042412 locus=Lus10042412.g ID=Lus10042412.BGIv1.0 annot-version=v1.0 MVMMMIQSSSAASAGIPTTGFVSQPFNESFYHIQSPYNLPESQRYSFVDGVHKCWVYSTDLPHTPTSRTKPRTEVAIQGYGYKSGTWQFEAYGYVPSGTS GVSIMQIFGSRPPTATSLMLHVYDGSLRYYSTRQVVLPNVYNKWFKLNVIDDFDSEKINVYINDELKLEVQGRGGKFHAFKCGVYGQRNESHLMESRWKN IRILKKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042412 [exp]	0	1
					Lus10016420 [exp]	4.6	0.8368
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	8.1	0.8284
AT5G44310			Late embryogenesis abundant pr...		Lus10028304 [exp]	9.5	0.7658
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041052 [exp]	9.8	0.8032
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	10.6	0.7930
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	12.5	0.7879
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	14.7	0.7711
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	18.6	0.7920
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	20.1	0.7571
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	20.5	0.7733

Compare expression of checked genes

Lus10042412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.