Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026258 [exp] 270 / 1e-89 ND / Lus10042412 [exp] 255 / 3e-84 ND / Lus10026257 [exp] 240 / 5e-78 ND / Lus10042813 [exp] 217 / 2e-67 ND / Lus10026194 [exp] 191 / 4e-59 ND / Lus10042472 [exp] 185 / 8e-57 ND / Lus10042473 [exp] 177 / 3e-52 ND / Lus10034839 [exp] 172 / 2e-51 ND / Lus10008920 [exp] 158 / 2e-46 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002400 [exp] 204 / 4e-64 ND / Potri.001G307000 [exp] 193 / 6e-60 ND / Potri.001G307100 [exp] 178 / 3e-54 ND / Potri.001G306932 [exp] 159 / 6e-47 ND / Potri.002G067000 [exp] 142 / 2e-40 ND / Potri.005G193200 [exp] 141 / 5e-40 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10042413 pacid=23153600 polypeptide=Lus10042413 locus=Lus10042413.g ID=Lus10042413.BGIv1.0 annot-version=v1.0 ATGGGAAGCCTGAAGAGTTCAGTAGTAGTACCATTCCAAGTACTGATGATGATCCAATTATCATCAGCAAGTATTCGCAGAACAGGATTCGTGACCCTGC CTTTCAATCACTCCATGTACCATATCCAGAGCCCTTACAACTTACCAGAAAGCAAACGCTACAGCTTCGTCGATGGAGTTCACAAGTGTTGGGTTTACTC CGCTGACCTACCTCATTCCCGCACCAGTCATACCAAGCCTCGGACTGAGGGATATATATACAAGTCGGGTGTTTGGCAATCCGAAGGGTACAGTGACGTG CCAAGTGGGACTTCAGGGTCGTTGTACCACATCCAGAGCCCTTATAACTTACCAGAAAGCAAACGTTACACCTTCATCAATGGAGTTCACAAGTCTTGGG TTTACTCCAATGACTTACCTCATTCCCGCACCAGTCGTACTAAGCCCCGCACCGAGATCGCCGTTCAGGGATATGGATACAACTCAGGTGTTTGGCAATT CGAAGGGTACGGTTACATCCCAAGTGGGACTTCGGGGGTTTGCATTATGCAAGTATTCGGATCAAGGCCTCCAACAGCTACTTCGTTGATGCTCGTAGTC TACAATAGCTCCCTGTATTACTATAGAACGAGTCAAGTCGTGCTTCCAAACATTTACGACAAATGGTTTAAGCTAAACGTGATTGATGATTTTGATTCTG GCATAATCAACGTCTACATCAATGACAAGCTCAATCGTACTAAGCCACGAACCGAGATCAAAGTTCAGGGATACATATACAAGTCTGGTGTTTGGCAATT CGAAGGGTATGCTTACGTGCCAAGTGGGACTTCAGGGGTGAGCATTATGCAAGTATTTGGGTCAAGGCCTCCGAGAGCTACTTCCTTGATGCTCCATGTC TACGATGGCTCCCTCCGTTACTACAGCACTGGCCAAGTTGTTCTCTCAAATGTCTACAACAAATGGTTCAAGCTGAACGTGATTGATGATTTTGATTCTG GCAGAATCAACGTCTACATCAACGATAAGCTCAAATTAGAGGTTCAAGGTCGCGGTGGCAAATTCCATGTTTTCAAATTTGGTGTCTATGGGCAGCGAAA TGAGTCTCGTCGCATGGAGTCTCGCTGGAAAAACATTCGAATTTTAAAGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10042413 pacid=23153600 polypeptide=Lus10042413 locus=Lus10042413.g ID=Lus10042413.BGIv1.0 annot-version=v1.0 MGSLKSSVVVPFQVLMMIQLSSASIRRTGFVTLPFNHSMYHIQSPYNLPESKRYSFVDGVHKCWVYSADLPHSRTSHTKPRTEGYIYKSGVWQSEGYSDV PSGTSGSLYHIQSPYNLPESKRYTFINGVHKSWVYSNDLPHSRTSRTKPRTEIAVQGYGYNSGVWQFEGYGYIPSGTSGVCIMQVFGSRPPTATSLMLVV YNSSLYYYRTSQVVLPNIYDKWFKLNVIDDFDSGIINVYINDKLNRTKPRTEIKVQGYIYKSGVWQFEGYAYVPSGTSGVSIMQVFGSRPPRATSLMLHV YDGSLRYYSTGQVVLSNVYNKWFKLNVIDDFDSGRINVYINDKLKLEVQGRGGKFHVFKFGVYGQRNESRRMESRWKNIRILKKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042413 [exp]	0	1
					Lus10028109 [exp]	7.3	0.7347
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10013123 [exp]	9.8	0.6934
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10025675 [exp]	10.0	0.6949
AT1G60400			F-box/RNI-like superfamily pro...		Lus10038935 [exp]	11.0	0.6949
					Lus10013650 [exp]	11.6	0.7049
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10010207 [exp]	15.0	0.5931
					Lus10024480 [exp]	15.7	0.6944
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	17.7	0.6912
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10003344 [exp]	20.2	0.6557
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	20.9	0.6529

Compare expression of checked genes

Lus10042413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.