Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31820 612 / 0 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G14820 487 / 2e-165 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 473 / 9e-161 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 461 / 5e-156 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 453 / 3e-154 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT1G67900 435 / 3e-145 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 379 / 6e-124 Phototropic-responsive NPH3 family protein (.1) AT5G47800 374 / 2e-122 Phototropic-responsive NPH3 family protein (.1) AT5G03250 356 / 4e-115 Phototropic-responsive NPH3 family protein (.1) AT1G30440 338 / 3e-107 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026255 [exp] 1025 / 0 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 530 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 528 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 494 / 8e-169 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 484 / 6e-165 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 432 / 7e-144 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 386 / 1e-126 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 359 / 2e-115 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 358 / 2e-115 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018600 [exp] 771 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 725 / 0 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 551 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 539 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 523 / 2e-179 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 459 / 9e-155 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 454 / 1e-152 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G003700 [exp] 405 / 4e-134 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 397 / 2e-131 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 379 / 9e-123 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10042414 pacid=23153943 polypeptide=Lus10042414 locus=Lus10042414.g ID=Lus10042414.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAATTAGGGTGCAAGCCGGATGTCTTTCAGGCCGAAGGAACCAGCAGGTATGTTCCATCCGAGCTGGCTACAGATGTCACCATTAATG TTGGTGAAGTTAAATTTTACCTCCACAAGTTCCCTCTCCTGTCGAAGAGCAGCCGATTGCAGAAACTAGTGGCGAAAGCTACTGAAGAGAGCTCCGATGA GATTGTCATACTCGATTTTCCCGGTGGACACAAGGCCTTTGAAATATGTGCCAAATTCTGCTACGGAATGACAGTCACTCTCAACGCTTACAATGTCGTA GCTGCTCGATGTGCAGCTGAGTACCTTGAGATGACTGAGGATGTCGATTCAGGGAACCTGATTTTCAAGATTGAGGTGTTCCTCAACTCGAGCATTTTCC GGAGCTGGAAAGATTCTATCATTGTTCTTCAGACCACCAAGGCTCTCTTGCCCTGGTCTGATGAGTTGAAGATTGTTGGGAGATGCATTGATTCCATTGC ATCCAAGACTTCTATTGACCCTTCCACTATCACTTGGTCTTATACTTATAATAGGAAGCTGAATGATGCAGACAATGAGATACTACCAGAAGATGATGAT GACGTGTATCGCAAGTTTCGAAAGAGAAACAGTCATCATCATGGTGTTCCAAACGATTGGTGGGTTGAAGATGCATGTGAGCTGGAAATTGACCTCTACA AGAGAGTGATTCTTGCTGTCAAATCAAAGGGGAGAATGGACTGTATGGTGATGGGTGAGGCTCTTAAATGTTACGCCCTTCGATGGCTTCCTGATTCCCT AGATGACTTGACTTGCGATGCAAGTACGTCGTGGCATAAGTATCTGGTGGAAACACTAATCCATCTTCTGCCTGCTGAAAAGGCTGGTGGTGACTGTTCT TGTAGTTTCTTACTCAAATTGTTGAAAGTTGCCATCTTTGCTGGAGTTAATGATACCCTCAAGGAAGATCTAGTGAAGAGGGCTGGTCTGAAGTTGCAGG AGGCCTCTGTTCAGGATCTGTTGATCCCGGCACAGTTGCCTCAGTCTACTACAAAGTACGATGTTGAGTTGGTGAAGAGCCTTGTGAATCAATTCCTGAC GAACGAAAAACATTGTCAGGAGTCGAGCATTGAGAAGAATGGTGGGGAAGTAGAAAGATTCCTTTTCCCACCTGAGCATAGGTCTTTGATGCATATTGGC CAACTGATTGATGGCTATCTGGCTGAGATTGCTCATGATGCCAATGTTGGCCTCAATAGCTTCATCGACCTTTCTCGATCTGTTCCAGAGCCTGCAAGGC CGATTCATGATGGTCTTTACATGGCCATTGACATCTACCTCAAGGAGCATCCAGGGTTGAGTAAGGATGAAAGAAAGAAGATGTGCAGCATGTTGGATGT CAAGAAGCTGACAATGAATGCTTCAATGCACGCAGCACAAAACGAGAGTCTCCCGCTTCGTTTGGTTGTACAAGTTCTCTTCTTTGAGCAGGTCAGAGCA GCAGTAGCAGCTAATGCTCAAAGCCTCAACCACAACCTGAATTACACTTCGAATGCGATGAAAAACACAGAAGAAGGTTGCGAAGTCCTTGAGAAGCAAA TAAGCGTGAAATTGAAGGTAGCAACTGGTGAGGCTGAGGAGGAACAGAGGAATGTGAGGGTGATGAAGAAAAATAGCAGCAAGAACAGCAAACGTGGATT GCAGTTACTACCGTCTCGGTCAAGGAGGATTTTCGACAAGTTGTGGGGTGTTGGGAGGGGAGGGCATGTAGTAGAGAGCAAGAGCTCTGAGACTTCTGGC AGCTCAGAGAGCCCACCTTCAATGGCTCCTGGAGATGCCAAGTCTTCTGGTTCATCTTCAAGGCACAGGAGACACTCTATCTCCTGA
AA sequence Show only first row Show all	>Lus10042414 pacid=23153943 polypeptide=Lus10042414 locus=Lus10042414.g ID=Lus10042414.BGIv1.0 annot-version=v1.0 MKFMKLGCKPDVFQAEGTSRYVPSELATDVTINVGEVKFYLHKFPLLSKSSRLQKLVAKATEESSDEIVILDFPGGHKAFEICAKFCYGMTVTLNAYNVV AARCAAEYLEMTEDVDSGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKALLPWSDELKIVGRCIDSIASKTSIDPSTITWSYTYNRKLNDADNEILPEDDD DVYRKFRKRNSHHHGVPNDWWVEDACELEIDLYKRVILAVKSKGRMDCMVMGEALKCYALRWLPDSLDDLTCDASTSWHKYLVETLIHLLPAEKAGGDCS CSFLLKLLKVAIFAGVNDTLKEDLVKRAGLKLQEASVQDLLIPAQLPQSTTKYDVELVKSLVNQFLTNEKHCQESSIEKNGGEVERFLFPPEHRSLMHIG QLIDGYLAEIAHDANVGLNSFIDLSRSVPEPARPIHDGLYMAIDIYLKEHPGLSKDERKKMCSMLDVKKLTMNASMHAAQNESLPLRLVVQVLFFEQVRA AVAANAQSLNHNLNYTSNAMKNTEEGCEVLEKQISVKLKVATGEAEEEQRNVRVMKKNSSKNSKRGLQLLPSRSRRIFDKLWGVGRGGHVVESKSSETSG SSESPPSMAPGDAKSSGSSSRHRRHSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	0	1
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	2.8	0.7819
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	3.7	0.8010
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	6.9	0.8016
AT3G24150			unknown protein		Lus10043262 [exp]	7.3	0.7723
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	8.3	0.7895
AT4G33800			unknown protein		Lus10033772 [exp]	9.2	0.7402
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	10.2	0.7132
AT1G12330			unknown protein		Lus10032197 [exp]	11.8	0.7680
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	13.7	0.7447
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	16.2	0.7603

Compare expression of checked genes

Lus10042414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.