Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10840 1052 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 1046 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 986 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 904 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 878 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 500 / 9e-170 Endomembrane protein 70 protein family (.1.2) AT4G12650 464 / 7e-156 Endomembrane protein 70 protein family (.1) AT2G01970 332 / 1e-105 Endomembrane protein 70 protein family (.1) AT1G14670 327 / 2e-103 Endomembrane protein 70 protein family (.1) AT5G37310 317 / 8e-100 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026254 [exp] 1201 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10000222 [exp] 1021 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 921 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 917 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10027831 [exp] 509 / 2e-173 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 505 / 1e-171 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 492 / 1e-166 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 363 / 3e-117 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10031308 [exp] 310 / 4e-97 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018400 [exp] 1076 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 1065 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 1002 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 1001 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 905 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 504 / 2e-171 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 494 / 2e-167 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 476 / 2e-160 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 474 / 8e-160 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 325 / 1e-102 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10042415 pacid=23153593 polypeptide=Lus10042415 locus=Lus10042415.g ID=Lus10042415.BGIv1.0 annot-version=v1.0 ATGGCGCCCGGAGGAGGAAGAACAAGTGGTAGATTCACATCGGCTTCCCCTCTCGCCCCGATCTCTTCATTCCTCTTCTTCTTCTTGCTCCTCGTTCATG GCGCTCGCTCCTTCTACCTCCCTGGTGTCGCCCCCGAGGATTTCATCAAGGGTGATGAGTTGAAGGTGAAGGTGAACAAGTTGACCTCGATCAAGACACA GCTGCCTTACTCCTTCTATTCTCTGCCTTTCTGCCGCCCTGGTAAGATCGTTGACAGTGCAGAGAATCTTGGTGAAGTCCTTCGGGGTGACAGAATTGAG AACTCACCCTATGTGTTCAAAATGAGGGATCCTAAAATGTGCAACATTCTTTGCCGGGTTACTCTTGATGGAAAAACTGCCAAGGCATTTAAGGAGAAGA TTGATGATGAATACAGAGTCAATATGATCCTTGATAATCTTCCTCTGGTGGTACCAATAAGGAGGCTGGATCAGGAGGCTCCTACCATCTATCAGCTTGG TTACCATGTTGGATTCAAAGGACAGTACAGTGGGAGCAAAGAGGAAAAATATTTCATCCACAACCATTTAGCATTCACCGTCAAGTACCACAGGGACTTG CAAACCGACTCCGCTAGAATTGTTGGATTTGAAGTGAAGCCCTACAGTATAAAGCATGAATATGAGGGGAAATGGAGTGACGAGAAGACCCGTTTAACCA CCTGCGATCCTCATACTAAGCGTACCGTTATCAATTCCAACACTCCTCAAGAAGTTGATGAAAAGAAGGAAATTGTTTTCACATTTGATGTTGATTTCCT GGAGAGTGACGTGAAGTGGGCATCTAGATGGGATGCTTATCTTTTGATGAGTGATGATCAGATCCACTGGTTCTCAATTGTCAATTCATTGATGATTGTT CTCTTCCTCTCTGGAATGGTTGCAATGATCATGCTAAGGACACTTTACCGTGACATTTCCAAGTACAATGAACTTGAGACCCAGGAGGAGGCACAAGAAG AGACTGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGCCCCCATCTAACTCAGAATTATTGTGCGTCTATGTTGGAACCGGTGTCCAATTTTTCTGCAT GATGGTCGTAACAATGCTCTTTGCCATTCTTGGTTTCCTTTCCCCATCGAACAGAGGGGGTCTCATGACTGCCATGCTGCTACTCTGGGTCTTCATGGGC CTGTTTGCTGGGTATGCATCATCCCGTCTCTACAAACTATTTAGAGGGACAGAGTGGAAGAAAATAGCTCTCCGGACCGCAATAATGTTCCCTGGGATAA TCTCTGCAATTTTCTTCGTCTTGAATGCCCTCATATGGGGACAGAAGTCATCTGGAGCTGTTCCATTTGGCACAATGTTTGCTTTGGTGTTCTTATGGTT TGGAATCTCAGTCCCACTTGTTTTCGTTGGAAGTTACATCGGATTCAAGAAGCCAGCTCTGGAGGATCCAGTAAAGACCAACAAAATTCCCAGGCAGATT CCAGAGCAAGCTTGGTACATGAACCCGGCATTCTCAATCCTGATCGGAGGGATACTTCCATTCGGAGCTGTCTTCATCGAGCTCTTCTTCATCCTCACCT CAATCTGGCTGAATCAGTTCTACTACATATTCGGTTTCCTCTTCTTGGTGTTCATCATTCTCATCATCACCTGCGCAGAGATTACAGTCGTGCTCTGTTA CTTCCAGTTGTGCAGCGAGGATTATCTATGGTGGTGGAGATCATACCTTACTTCAGGCTCTTCTGCACTCTACCTCTTCCTCTACGCCACATTCTACTTC TTCACGAAGCTGGAAATCACAAAGTTCGTATCCGGACTGCTGTATTTCGGGTACATGCTGATCGCTTCGTATGCATTCTTCGTCCTGACCGGCACAATCG GTTTCTACGCTTGCTTCTGGTTCACTAGGCTCATCTACTCCTCCGTGAAGATTGATTGA
AA sequence Show only first row Show all	>Lus10042415 pacid=23153593 polypeptide=Lus10042415 locus=Lus10042415.g ID=Lus10042415.BGIv1.0 annot-version=v1.0 MAPGGGRTSGRFTSASPLAPISSFLFFFLLLVHGARSFYLPGVAPEDFIKGDELKVKVNKLTSIKTQLPYSFYSLPFCRPGKIVDSAENLGEVLRGDRIE NSPYVFKMRDPKMCNILCRVTLDGKTAKAFKEKIDDEYRVNMILDNLPLVVPIRRLDQEAPTIYQLGYHVGFKGQYSGSKEEKYFIHNHLAFTVKYHRDL QTDSARIVGFEVKPYSIKHEYEGKWSDEKTRLTTCDPHTKRTVINSNTPQEVDEKKEIVFTFDVDFLESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIV LFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPSNSELLCVYVGTGVQFFCMMVVTMLFAILGFLSPSNRGGLMTAMLLLWVFMG LFAGYASSRLYKLFRGTEWKKIALRTAIMFPGIISAIFFVLNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFKKPALEDPVKTNKIPRQI PEQAWYMNPAFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILIITCAEITVVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYF FTKLEITKFVSGLLYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	0	1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	1.0	0.9633
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	2.0	0.9434
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	2.0	0.9520
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	3.0	0.9457
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	4.0	0.9314
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	4.2	0.9250
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	4.5	0.9398
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	5.5	0.9329
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	5.9	0.9317
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	7.9	0.9113

Compare expression of checked genes

Lus10042415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.