Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 585 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25070 583 / 0 Protein phosphatase 2C family protein (.1) AT5G10740 134 / 3e-36 Protein phosphatase 2C family protein (.1) AT5G24940 133 / 5e-35 Protein phosphatase 2C family protein (.1) AT2G33700 130 / 3e-34 Protein phosphatase 2C family protein (.1) AT2G25620 129 / 5e-34 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G51470 128 / 8e-34 Protein phosphatase 2C family protein (.1) AT1G48040 128 / 1e-33 Protein phosphatase 2C family protein (.1) AT1G43900 127 / 2e-33 Protein phosphatase 2C family protein (.1) AT4G31750 124 / 9e-33 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026253 [exp] 710 / 0 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10003423 [exp] 643 / 0 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026885 [exp] 615 / 0 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026886 [exp] 166 / 2e-46 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013124 [exp] 132 / 4e-35 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 132 / 6e-35 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 129 / 7e-34 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 128 / 2e-33 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 127 / 5e-33 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265100 [exp] 602 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017701 [exp] 597 / 0 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 547 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 543 / 0 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 258 / 8e-86 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.007G058700 [exp] 135 / 3e-36 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 132 / 6e-35 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.018G115100 [exp] 131 / 1e-34 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 130 / 3e-34 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G267600 [exp] 127 / 4e-34 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10042416 pacid=23153841 polypeptide=Lus10042416 locus=Lus10042416.g ID=Lus10042416.BGIv1.0 annot-version=v1.0 ATGGGTGTATACCTCAGTTCTCCCAAAACCGAGAAATTCTCAGAGGATGGAGAAAACGATAAGCTCAGATATGGGTTATCATCCATGCAAGGATGGCGTG CAACCATGGAAGATGCGCATGCTGCTTTGCTGGATTTGGATAGTTCTTCTTCATTCTTTGGTGTCTATGATGGCCATGGAGGTAAAGTGGTCGCCAAATT CTGTGCCAAATATCTTCATCAACAGGTTCTGAAACATGAGGCGTATGTAGCTGGCGATGTAGGAACTTCTCTTCAGAAAGCATATTTCAGAATGGATGAG ATGATGCGTGGACAAAGAGGATGGAGAGAGTTGGCTGTTTTAGGTGATAAGATTAACAAGTTCTCTGGCATGATTGAAGGGTTTATATGGTCTCCCAGAG CTGGTGAGAATAGTGAACAGCATGATGATTGGGCTTTTGAAGAGGGTCCTCATTCCGACTTTTCTGGACCTACTTCTGGCTGCACGGCTTGCGTAGCGGT AATAAGAAACAACAAACTTGTTGTAGCAAATGCAGGTGATTCTCGGTGTGTGATATCTCGAAAGGGACAGGCCTACAATTTGTCCATAGATCACAAACCT GATCTCGAGGTTGAGAAAGAAAGGATTTTAAAAGCAGGTGGTTTCATACATGCTGGGCGTGTCAATGGCAGCTTGAATCTTGCTAGAGCTATTGGTGATA TGGAATTCAAGCAGAATAAGTTCTTGCCTGCAGAAAAGCAAATTGTGACTGCGGATCCTGATATTAACACTATTGAGCTTTGTGAGGATGATGATTTTTT TGTTCTCGCATGCGATGGAGTATGGGACTGCATGTCAAGCCAGCAACTAGTAGACTTCATTCATGAACAACTGAAATCGGAAACTAAGCTATCTAAAGTG TGCGAGAGGGTATTCGATAGGTGTTTAGCACCATCCACAGCTGGGGGAGAGGGATGTGACAATATGACAATGATCTTAGTGCAGTTTAAGAAACCAGCCG AGTCGAGTCGCCCTGGGAAGGAGGAGCAAATATCTGAAGCTGAAGTTTCTGCCAACCCCGTTGAAAATGAGTCGACTGCTAGACCTGAAGGAAGTGAATG A
AA sequence Show only first row Show all	>Lus10042416 pacid=23153841 polypeptide=Lus10042416 locus=Lus10042416.g ID=Lus10042416.BGIv1.0 annot-version=v1.0 MGVYLSSPKTEKFSEDGENDKLRYGLSSMQGWRATMEDAHAALLDLDSSSSFFGVYDGHGGKVVAKFCAKYLHQQVLKHEAYVAGDVGTSLQKAYFRMDE MMRGQRGWRELAVLGDKINKFSGMIEGFIWSPRAGENSEQHDDWAFEEGPHSDFSGPTSGCTACVAVIRNNKLVVANAGDSRCVISRKGQAYNLSIDHKP DLEVEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTADPDINTIELCEDDDFFVLACDGVWDCMSSQQLVDFIHEQLKSETKLSKV CERVFDRCLAPSTAGGEGCDNMTMILVQFKKPAESSRPGKEEQISEAEVSANPVENESTARPEGSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	0	1
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	1.0	0.9321
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	1.7	0.9230
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	2.0	0.9300
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	4.9	0.9140
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	6.0	0.8729
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	6.2	0.8661
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	7.0	0.8856
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	8.5	0.8672
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	9.1	0.8493
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	9.2	0.8650

Compare expression of checked genes

Lus10042416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.