Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042418 [exp] 175 / 1e-55 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10003421 [exp] 83 / 3e-19 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10026887 [exp] 80 / 1e-18 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10026843 [exp] 72 / 1e-15 ND / Lus10028090 [exp] 66 / 8e-14 ND / Lus10010056 [exp] 49 / 5e-08 ND / Lus10023790 [exp] 50 / 6e-08 ND / Lus10012088 [exp] 45 / 4e-06 ND / Lus10024969 [exp] 40 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265400 [exp] 59 / 7e-11 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042417 pacid=23153786 polypeptide=Lus10042417 locus=Lus10042417.g ID=Lus10042417.BGIv1.0 annot-version=v1.0 ATGGATTTTTCGGTGGAGGCGCGGGCGAAAACACCAAAAGATCGAGACTTTGCAACAAACCCAGCTAAATTCTGGGACTGCAACGAGAACCCTTGTTGCA GAAACCCGGATCTAGAAGACCCGAGTAGAGATAACCTAATTGATCCACTAGAAACACCTAACGACTGCCATGGAGAACAAGACCTTGCCATTTCTGAAAT GTTGTGCAAAGGTGAAGTGAAAGCTGTAGCGAACGGCAAAGAAGAAGCCATATTCGCCGTGTCTGATCGCAGAACTCAGAAGCTCCTTTCTTTGCTAGTT TGTGTTGTTGCTAGACTAGAGATGATGTTGCCTCATGCGGTTCGTGAGTTCTACTGCACACTCGAGATTGGCAAGTACACTTCCACCTCTCAGAAGGTGA TTTCCTTCCGCTTGGGAGGATGGCTGCACACCGTGTTCCCGGCAACGACGCCAATTTGA
AA sequence Show only first row Show all	>Lus10042417 pacid=23153786 polypeptide=Lus10042417 locus=Lus10042417.g ID=Lus10042417.BGIv1.0 annot-version=v1.0 MDFSVEARAKTPKDRDFATNPAKFWDCNENPCCRNPDLEDPSRDNLIDPLETPNDCHGEQDLAISEMLCKGEVKAVANGKEEAIFAVSDRRTQKLLSLLV CVVARLEMMLPHAVREFYCTLEIGKYTSTSQKVISFRLGGWLHTVFPATTPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042417 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	3.0	0.8385
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	3.3	0.7685
AT1G28250			unknown protein		Lus10015429 [exp]	4.0	0.8025
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	4.9	0.7821
AT1G28250			unknown protein		Lus10014006 [exp]	6.9	0.8092
AT1G11070			unknown protein		Lus10038307 [exp]	7.7	0.8102
					Lus10013984 [exp]	8.2	0.7257
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	12.0	0.7938
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10027390 [exp]	13.0	0.7602
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	17.1	0.7870

Compare expression of checked genes

Lus10042417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.