Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31870 324 / 4e-113 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 314 / 3e-109 ATGPX1 glutathione peroxidase 1 (.1) AT4G11600 254 / 1e-85 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT2G43350 241 / 6e-81 ATGPX3 glutathione peroxidase 3 (.1.2) AT2G31570 239 / 7e-81 ATGPX2 glutathione peroxidase 2 (.1) AT1G63460 223 / 1e-74 ATGPX8 glutathione peroxidase 8 (.1) AT3G63080 211 / 1e-69 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G48150 207 / 5e-68 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026887 [exp] 344 / 5e-121 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10003421 [exp] 322 / 5e-111 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10008499 [exp] 253 / 3e-85 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 249 / 1e-84 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10008022 [exp] 248 / 7e-84 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10027021 [exp] 246 / 2e-83 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10008023 [exp] 226 / 4e-74 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10000601 [exp] 216 / 1e-71 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10000603 [exp] 216 / 1e-71 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265400 [exp] 338 / 5e-119 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.001G105200 [exp] 258 / 4e-88 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.003G126100 [exp] 256 / 3e-86 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.007G126600 [exp] 253 / 1e-85 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.001G105100 [exp] 236 / 5e-79 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.014G138800 [exp] 218 / 2e-72 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 204 / 1e-66 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10042418 pacid=23153616 polypeptide=Lus10042418 locus=Lus10042418.g ID=Lus10042418.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTTGCCGTTCGCTACAGCTTTCACTTCACCTTTGCACAACATTTCAGAAATGGCAAGGTCTTGTTCTCCATGGCAGTCGTTAGGTGTTT CTAGTGGATCAATTAGGTTATCTCTACTCGGGTCTTCTAGATCCGGGTTTCTGCAACAAGGGTTCTCGTTGCAGTCCCAGAATTTAGCTGGGTTTGTTGC AAAGTCTCGATCTTTTGGTGTTTTCGCCCGCGCCTCCACCGAAAAATCCATTCATGACTTTACTGTCAAGGATATTGATGGTACCGATGTGGCTCTTAGC AAATTCAAGGGAAAAGTTCTTTTGATTGTCAATGTAGCCTCCAGATGTGGTTTGACATCATCCAACTATTCAGAACTGTCCCAGATTTATGACAAGTACA AGACCCAGGGACTTGAAATACTAGCATTCCCTTGCAATCAGTTTGGAGGCCAAGAACCAGGATCGAATCCAGAGATCAAGAATTTCGCATGTAGCAGATT CAAAGCTGAATTTCCTATATTTGATAAGGTTGACGTGAATGGACCAAACACAGCCCCAGTTTACCAGTTTTTGAAGTCCAACGGTGGTGGGATTTTAGGG GATTTGATCAAGTGGAATTTTGAGAAGTTCTTGGTGGACAAGAACGGTAAGGTTGTCCAACGGTATCCACCAACAACATCACCTCTCCAAATTGAGAAGG ATATTCAGAAACTGCTGGCGGCTTAA
AA sequence Show only first row Show all	>Lus10042418 pacid=23153616 polypeptide=Lus10042418 locus=Lus10042418.g ID=Lus10042418.BGIv1.0 annot-version=v1.0 MASSLPFATAFTSPLHNISEMARSCSPWQSLGVSSGSIRLSLLGSSRSGFLQQGFSLQSQNLAGFVAKSRSFGVFARASTEKSIHDFTVKDIDGTDVALS KFKGKVLLIVNVASRCGLTSSNYSELSQIYDKYKTQGLEILAFPCNQFGGQEPGSNPEIKNFACSRFKAEFPIFDKVDVNGPNTAPVYQFLKSNGGGILG DLIKWNFEKFLVDKNGKVVQRYPPTTSPLQIEKDIQKLLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10042418 [exp]	0	1
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	7.1	0.8613
AT1G66080			unknown protein		Lus10010967 [exp]	8.1	0.8720
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	9.4	0.8664
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	9.5	0.8481
AT3G13130			unknown protein		Lus10039066 [exp]	12.1	0.8393
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	13.6	0.8594
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	15.6	0.8600
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	17.7	0.8039
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	19.4	0.8384
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	22.4	0.8326

Compare expression of checked genes

Lus10042418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.