Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25120 303 / 3e-98 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26320 298 / 3e-96 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48280 296 / 7e-96 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26210 294 / 7e-95 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25140 293 / 2e-94 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 291 / 8e-94 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26310 289 / 9e-93 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48270 288 / 9e-93 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT5G25180 288 / 2e-92 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26300 288 / 2e-92 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026252 [exp] 689 / 0 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 515 / 0 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10018263 [exp] 508 / 5e-178 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10012767 [exp] 454 / 3e-157 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 454 / 5e-157 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 448 / 1e-154 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10028926 [exp] 429 / 8e-147 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10041667 [exp] 414 / 2e-141 AT3G26300 375 / 3e-125 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 404 / 2e-137 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 432 / 2e-148 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 425 / 8e-146 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 418 / 3e-143 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 417 / 1e-142 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 408 / 4e-139 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 404 / 7e-138 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 401 / 1e-136 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 398 / 2e-135 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 390 / 4e-133 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 389 / 8e-132 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042419 pacid=23153661 polypeptide=Lus10042419 locus=Lus10042419.g ID=Lus10042419.BGIv1.0 annot-version=v1.0 ATGCAGTTGCAGTTGGGAGAGTTGCTTCACATCGTCATTTCCTCACCCGAAGCTGCCAAACAGGTGATGAAAACTCACGACTTAGCGTTCGCTTCGAGAC CCTTTATGCTGGCCCCGCATATCCTCTACGACGGTACCAAGGACATAGCATTCTCGCCTTACGGAGAGTACTGGAGACAGATGCGTAAGGTCTGCGTGCT CGAACTACTAAGCACCAAGCGCGTTCTTTCCTTCCGTCCAATCAGGGAGGACGAGGTGTCGAAGCTCGTGGACAATATCTCTAGTAGCGCCCATAAGCCT GTGAATTTAACTGCCATGGTGACCAAGCTGACGAGTTGCGTGACATCCAGGGCAACATTCGGCAAAGCGCAAGAGCTGAACGATGCTTTCATGATGGTTG TCGACAACATTTCTGATGTACTTGCAGGTTTCAAAATATCGGATCTCTATCCTTCCCTCAAATTCCTTGCTAGCTTCACTGGCTTCAAGGCAACACTTGA AGAGATGCACAGAGCATCCGGTTCCATTCTTGACCGCGTAATCGAGGAACATATATCAAAAAGGAGTAGCGCGAGAAAGGACAAAGATGATGCCGAAAAG GATGACCTTGTAGATGTCCTCTTGAATCTTCAGGAAAACCAAAACCTTGGAGTTTCCATAACAAAAGAAGTTATCAAAGCCGTCACTTTGGAATTGTTTC TTGGAGGAATTGAGACCTCATCAACAGCAATAGAGTGGACTATGTCCGAAGTGCTCAAAGATGCTAGAGTTTTACAAAAAGCACAAGAAGAAGTACGGAA GGTGTTCAGCGACACCTCAAGGGTTGAGGAGGCAAGTCTTCACAAACTGAACTACTTGGACATGATCATCTCTGAAAGTTTAAGATTACACCCTCCATTG CCTCTACTTGTCCCAAGAGAGAATGACGACAAGGCAGAGCTCAACGGCTACGATATACCCATGAAAACCCAAGTCATCGTGAATGCTTGGGCGATCAATC GAAATGCTCGCCATTGGGCCGATCCTCACAGGTTTTATCCTGAAAGATTCACAGATTGCTCAGCAGATTACAAGGGAAATTACCATCACTTCATTCCGTT TGGTGCCGGACGAAGGATGTGCCCTGGTGTTTCGTTTGGAGTTTCGATCGTGAAACTAACTTTAGCCAATTTGTTCTTTCATTTCGACTGGAAACTTCCT GACGAGACCAAACAAGAGAATCTTGATATGACTGAAGTGTTTGGAGTGGCGCTCAAGAGAAAATATGCTCTGCGTCTTGTCCCAATTCCATACAAGGCTT GA
AA sequence Show only first row Show all	>Lus10042419 pacid=23153661 polypeptide=Lus10042419 locus=Lus10042419.g ID=Lus10042419.BGIv1.0 annot-version=v1.0 MQLQLGELLHIVISSPEAAKQVMKTHDLAFASRPFMLAPHILYDGTKDIAFSPYGEYWRQMRKVCVLELLSTKRVLSFRPIREDEVSKLVDNISSSAHKP VNLTAMVTKLTSCVTSRATFGKAQELNDAFMMVVDNISDVLAGFKISDLYPSLKFLASFTGFKATLEEMHRASGSILDRVIEEHISKRSSARKDKDDAEK DDLVDVLLNLQENQNLGVSITKEVIKAVTLELFLGGIETSSTAIEWTMSEVLKDARVLQKAQEEVRKVFSDTSRVEEASLHKLNYLDMIISESLRLHPPL PLLVPRENDDKAELNGYDIPMKTQVIVNAWAINRNARHWADPHRFYPERFTDCSADYKGNYHHFIPFGAGRRMCPGVSFGVSIVKLTLANLFFHFDWKLP DETKQENLDMTEVFGVALKRKYALRLVPIPYKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	0	1
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	1.7	0.8924
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	2.8	0.8830
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	3.5	0.8724
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	4.7	0.8468
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	5.0	0.8559
AT2G43990			unknown protein		Lus10008165 [exp]	6.5	0.8554
AT5G46030			unknown protein		Lus10015293 [exp]	8.5	0.8605
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	9.2	0.8529
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	10.0	0.8496
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	11.5	0.8404

Compare expression of checked genes

Lus10042419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.