Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25060 1085 / 0 RNA recognition motif (RRM)-containing protein (.1) AT5G10800 1008 / 0 RNA recognition motif (RRM)-containing protein (.1) AT1G54080 61 / 2e-09 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 61 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 60 / 5e-09 ATRBP47A RNA-binding protein 47A (.1) AT1G17370 58 / 2e-08 UBP1B oligouridylate binding protein 1B (.1.2) AT3G19130 56 / 1e-07 ATRBP47B RNA-binding protein 47B (.1) AT1G47490 55 / 2e-07 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 55 / 2e-07 ATRBP47C' RNA-binding protein 47C' (.1) AT5G54900 53 / 7e-07 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026251 [exp] 1659 / 0 AT5G25060 1223 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10026892 [exp] 1352 / 0 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10031277 [exp] 60 / 7e-09 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012071 [exp] 59 / 7e-09 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 59 / 1e-08 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031844 [exp] 59 / 2e-08 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027911 [exp] 56 / 4e-08 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 57 / 5e-08 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10011924 [exp] 55 / 2e-07 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265700 [exp] 1272 / 0 AT5G25060 1182 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.018G017200 [exp] 1254 / 0 AT5G25060 1179 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.009G054400 [exp] 65 / 1e-10 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 58 / 2e-08 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 57 / 4e-08 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G017200 [exp] 56 / 6e-08 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G157300 [exp] 52 / 8e-08 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 56 / 1e-07 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.011G138400 [exp] 55 / 2e-07 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G166100 [exp] 54 / 3e-07 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module CL0221 [flax] [poplar] PF08312 [flax] [poplar] cwf21 cwf21 domain
Representative CDS sequence Show only first row Show all	>Lus10042420 pacid=23153763 polypeptide=Lus10042420 locus=Lus10042420.g ID=Lus10042420.BGIv1.0 annot-version=v1.0 ATGAGTTCATTCTCCATTACTCGCAAGAAAACCCCCTTTCAGAAACACAGAGAGGAAGAAGAGGCTAGGAAGAAGAGGGAGAAAGATGAAGCGGCTCGTG TGTATGCTGAATTTTTGGAGTCATTCCAAGGGGATACGGCTCCTGGTTCAAAGACTTTTGTCAGAGGTGGATTGATCAATCCCAATGACAAAGCGAAGGA CGATTCTGAAGGTGAAACGTCCAAAGATGGGGTATCTATTCCAAAGAAGGGAAGTAGGTACGTCCCATCCTTTTTACCCCCTTCCATGGCATCCAAAGGA AAGGAATCTGAGAAGAGGGTGGAGGAGGAAAGACCAAAGGACAGGGAAAAAGGAAAGAGCAGAAATATAGATCATTTTATGGAAGAGCTGAAGCATGAGC ATGAATTGAGGGAGAGAAGGAATCAGGAACGTGAGAGTTGGCGTGATGGACGTCCTAGTGAGAGTTCTCTTTCATCCAGTCGCTTCGATGAACTTCCTGA TGATTTTGATTCAAGTGGAAGGCTTCCAGGATCATTTGATGATGGTGATCCGCAAACTACCAATCTTTATGTGGGAAATCTTTCACCTCAGGTTGATGAG AATTTTCTTTTGCGCACTTTTGGGAGATTTGGGCCTGTCGCTAGTGTAAAGATAATGTGGCCTAGAACAGATGAAGAGCGGAGGAGAGAAAGAAATTGTG GATTTGTAGCATTTATGAACAGAGCTGAGGCTCAAGCAGCAAAAGATGAAATGCAAGGAGTGGTTGTTTACGAGTATGAGTTGAAAATTGGATGGGGCAA ATCTGTGGCTCTTCCTTCTCAAGCTCTGCCTGCTCCTCCTCCGGGTCAGATGGCCATCAGGAGCAAGGAGGGTGCCACTGTCATACTCTCCGGTCCATCA GGTCCACCCGTTACCTCTATTCCAAGTCAGAACTCTGAACTGGTTCTTACTCCAAATGTTCCTGATATAAAGGTTGTTCCACCTGATGATGTTCATCTTC ACCATGTGATTGATACAATGGCTCTATATGTGCTTGATGGAGGATGTGCTTTTGAGCAAGCAATCATGGAAAGGGGCCGTGGGAATTCTATTTTTAACTT CCTCTTCGAGCTTGGCTCGAAGGAGCATACATACTACGTCTGGAGGGTCTATTCATTTGCACAGGGTGATACTCTTCAAAGATGGAGAACAGAACCCTTT ATCATGATAACTGGCAGTGGGAGATGGATACCGCCACCTTTGCCAGCTGTAAAATGTTCGGAGCATGAAAAGGATGCTGGTACTACTTATGCCGCCGGGA AAAGCAGGCGGCTCGACCCAGAACGAACACTGACAGATCCACAGAGGGATCAATTTGAGGATATGCTGCGTGCACTGACATTAGAAAGAAGTCAGATAAA GGATGCCATGGGTTTTGCATTGGACAATGCTGATGCAGCTGGAGAGATAGTGGAGGTCCTGACAGAATCACTGACCCTGAAGGAAACTCCTATTCCAACA AAAGTTGCAAGGCTCATGCTTGTATCTGATGTCCTTCACAATAGTAGTGCGCCTGTAAAGAATGCTTCTGCATACCGGACCAAGTTTGAAGCTACTCTAC CTGATATAATGGAGAGCTTTAATGACTTGTACTGCAGCATAACTGGGAGAATGACGGCTGAGGCCCTCAAGGAGCGAGTTCTTAAAGTTCTACAAGTATG GTCGGATTGGTTCCTGTTCTCAGATGTATATGTCAATGGCCTTCGGGCAACATTTCTTCGATCCAGTAATTCTGGCGTGGTCCCATTTCATTCTTTGTGC GGTGATGCTCCTGAAATGGAGAAGATTGGTTCAGAAGAAGCTGGTAATGGAGTGAAGACCGACCAGGATGCTGCACTGGCAATGGGGAAAGGAGCAGCAA CAAAGGAGTTGATGAGCCTTCCCCTCGCTGAGCTGGAAAGGCGTTGCAGACATACCGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGATT ACTCAGCCTGGAAGAGGCAGAAAAGCAGAGGGGTCACGAGTTAGATGACGACTTAAAATTTTCTCAAAGCCAGTCAACCTCTGGTAGACTTATGAGTGGT TACAAAGAAACTGGTGTCGACCCCATGGGATTCTCTGGGCGGGATAGTTCTAGGATGGATGACCTGCAGATAAAAGGCACTGGCACTGAACCCTTTGCTT CAACCCTTAAAATTCCTCAACCTGCGTTAAAACCCTTCACATATAAGACAGATACTGTTTTACGATCCTCGAAATGGGCTAGAGATGATGCTGATAGTGA CGATGAACAAAAGAGAAACACTGGCGGTATAGGGTTGAGTTATTCATCTTCTGGAAGTGAAAATGCTGTTGATGATCCAGGCAAGGCAGATGAAGATGAG TTTGCTAGGAATGTAGCTGTTTCGGCACTACCAGATAGCAGGATAAATGAAGAGCAGAGACAGAAGTTGAGGCGGTTGGAGGTTGCTTTGATAGAATATC GTGAATCCCTGGAGGAAAGAGGAATAAAAAGTTCAGAGGAAATTGAGAGAAAGGTAACAATCCAACGGAAAAGGCTGGAAGGTGAATATGGTCTCTTGAA TTCAAATGAAGACACAGCAGAAAACAACAAAAGAGCTTCTTGGGAAAGGAAGGAGAGCAGTAACCAAGAATCATCAAGAAAGCGGCCGAGGACCCAGCAG AGTGGAACTGACAGTCCTCGTCAGAGACCTTCAGCAAGTGATAGGGATAGAGGTCATGAGATGGAGAATGAAGCACGAATTCGGCGTAGAAGTAAAGAAG ATAATTATGACAGAGATAGAAACAGAGACAGGGATAGAGATGCTGAAAGGCGGAGGCGACTCAAGTAG
AA sequence Show only first row Show all	>Lus10042420 pacid=23153763 polypeptide=Lus10042420 locus=Lus10042420.g ID=Lus10042420.BGIv1.0 annot-version=v1.0 MSSFSITRKKTPFQKHREEEEARKKREKDEAARVYAEFLESFQGDTAPGSKTFVRGGLINPNDKAKDDSEGETSKDGVSIPKKGSRYVPSFLPPSMASKG KESEKRVEEERPKDREKGKSRNIDHFMEELKHEHELRERRNQERESWRDGRPSESSLSSSRFDELPDDFDSSGRLPGSFDDGDPQTTNLYVGNLSPQVDE NFLLRTFGRFGPVASVKIMWPRTDEERRRERNCGFVAFMNRAEAQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPS GPPVTSIPSQNSELVLTPNVPDIKVVPPDDVHLHHVIDTMALYVLDGGCAFEQAIMERGRGNSIFNFLFELGSKEHTYYVWRVYSFAQGDTLQRWRTEPF IMITGSGRWIPPPLPAVKCSEHEKDAGTTYAAGKSRRLDPERTLTDPQRDQFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLKETPIPT KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRMTAEALKERVLKVLQVWSDWFLFSDVYVNGLRATFLRSSNSGVVPFHSLC GDAPEMEKIGSEEAGNGVKTDQDAALAMGKGAATKELMSLPLAELERRCRHTGLSLVGGREMMVARLLSLEEAEKQRGHELDDDLKFSQSQSTSGRLMSG YKETGVDPMGFSGRDSSRMDDLQIKGTGTEPFASTLKIPQPALKPFTYKTDTVLRSSKWARDDADSDDEQKRNTGGIGLSYSSSGSENAVDDPGKADEDE FARNVAVSALPDSRINEEQRQKLRRLEVALIEYRESLEERGIKSSEEIERKVTIQRKRLEGEYGLLNSNEDTAENNKRASWERKESSNQESSRKRPRTQQ SGTDSPRQRPSASDRDRGHEMENEARIRRRSKEDNYDRDRNRDRDRDAERRRRLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	0	1
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	2.0	0.8850
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	2.8	0.8375
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	7.3	0.8591
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	13.2	0.8573
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10025270 [exp]	16.2	0.8112
AT5G59830			unknown protein		Lus10025307 [exp]	17.4	0.8213
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	22.4	0.7934
					Lus10036475 [exp]	27.5	0.7824
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	28.2	0.8305
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	28.3	0.8442

Compare expression of checked genes

Lus10042420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.