Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32140 359 / 3e-118 EamA-like transporter family (.1) AT3G20070 139 / 1e-36 TTN9 titan9 (.1.2) AT3G07080 93 / 1e-19 EamA-like transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026249 [exp] 546 / 0 AT4G32140 320 / 3e-107 EamA-like transporter family (.1) Lus10026248 [exp] 498 / 1e-172 AT3G20070 140 / 5e-39 titan9 (.1.2) Lus10006194 [exp] 363 / 2e-119 AT4G32140 610 / 0.0 EamA-like transporter family (.1) Lus10041032 [exp] 361 / 7e-119 AT4G32140 607 / 0.0 EamA-like transporter family (.1) Lus10011864 [exp] 67 / 2e-11 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 66 / 3e-11 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024700 [exp] 386 / 1e-128 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G257000 [exp] 383 / 1e-127 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.006G266400 [exp] 376 / 9e-125 AT4G32140 397 / 6e-137 EamA-like transporter family (.1) Potri.009G049500 [exp] 197 / 2e-57 AT3G20070 187 / 8e-58 titan9 (.1.2) Potri.014G189500 [exp] 103 / 3e-23 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10042422 pacid=23153937 polypeptide=Lus10042422 locus=Lus10042422.g ID=Lus10042422.BGIv1.0 annot-version=v1.0 ATGGGTTGGAGATACAGAGCTGGATTGGGACTCATTGCTATGGTTGTTTTCATTTGGGTTGCCTGCGCAGAGATCACTCAGAGAATCTTCGACAAGTATG AACATCCTTTTGCCCTGACCTACCTTGGAGTGTCACTAATGCTGCTCCATCTCCCAATCGCATTCTTGAAAGACTGGTTGAGTAGCTTGTTCGGAGGGAT TAAAGACGAGATTCAGTTACAGAGTCACACTAATTACTCTAACAACACATCTTCTTCTTCAGAACCAGAAACTAATAAGATTACACGTAGCATCGGTTTA AATCACAAGGATCTTAGTGAGAGGGAAGAAGGAAGGCCTTTGATTTCTAACGACCAAGTTGTTGGCCAACACGGTATTGATCATCAGTTGCTCAATAAGC AGATCGCTCCCCAACTAGGTTCCTCCGAAATTGCTAAATGTTGCTTGTATCTCGCTCCAATATGGTTCCTATCAGAGTATCTATCAAACTTGGCCCTTGT ATATACAAGTGTTGCAAGTACGACCGTCATAAGTTCGACCTCAGGGTTATTCACCCTTGCATTTGGTGCAATTCTTCGTCAGGAGTCGGTCAATGCTGCT AAGGTGGTTGCTGTTGTTATTAGCATGGCTGGTGTTGCCATGACTACGGTTGGAAAGACTTGGGAAATTGATGAAAGGTCGGCCACGCCTCAGACAAGGA AGCACTGTATTGACGGCGACATACTTAGCCTATTGGCAGCCATAACATACGCCTTATTTACGGTTCTACTCAAGAGATCCACAGGAACACAAGGGCACAA CGTTGATATGCAAAACTTCTTGGGATACATCGGCCTTTTCACCCTTGTTGGCTTTTGGTGGCTGTCGTGGCCTCTCAGTGCAATAGGAATAGAGCCCAGA TTTAGCTTTCCGGATTCAGCATCAATTGATGAGGTTGTGGTGTTGAATAGCTTCCTAGACAGCTTTTTAGCAGACTACTTCTGGGCTCTTTCTGTGATAT GGACTACACCATTGGTGGCCACGCTGGGGACGTCCTTGACAATTCCTCTGGCTATGGTGGCTGATATGGTGATTCATGGTCGTCACTACTCAGCGATATA CATCTTCGGCTGTGTCCAAATAGATTTATGTATATCGGTGCTTGGCTTCTCTCAGCTTGTTGGTGTTAATCAACATTGTCACCATCATCTTCAGAACCTC CCTATAAAGTCTGCTGAAGAGCTTATACAACACTTGAAAGATGAAAACAATAAGCTACATTCAGAAGTTAGCGAGTTGAGAATTGAAGTTACCTCAATCA GGTCGGAGAAGGATGTGGAATGTGCCGAGTACCAGAAGCGGCTTATGGAAGAGACTGAAAAGATAGAGAGGATTCAGAAACTACTTGATGAATCTTGTAG TGTAAAGGATGGCACCACCATACAACGAAAATCAGGTGAAGTATTGAACAGTTCAACGAGAAGAAAAGCTGGAAAGTCTAATAATGCAGGAGGAACGATT GAGATCGATGAGTGTACAGCCACCCCTGCTCCCAACAAGCAACCTCTCAATCTCCTTAATGCTGCGCGTCAAAACAACGATAGAAATGATGAAGTTATGT CACATGAGGTGTCTAATGGCTCAAGGATAATGACACGAAAGCGCAGCCGAGAACCTAGGACCGAAAAGGAAGATGGTATTCGTATTCATGGTTCCGCTGG TCCAGCTAAGAAAAGGATAAAAGAATCAGCTAGAGATTCACCCCAAGGTGATGGAGAGCCAACGAACTGTCAATTTCAAGCTCTTATTGAGTGCTTGCTG GGCATGAAATTATCTCCTGTCAATCAAAATGGAGGGATATGCATTTCAGCTATGCATCAAACAAGTGGTTATTCATTCAGTCTAACACGGGTCCAGAACT CAACAATTGGAGAAGCAGAGCTTGTGTATCGGGTAGCAGCACTAGGGACATTTGATCGGGTAGCACCAGAGTGGACGAGGTCAGTGATAATGTTCAGTAT CAGCATGTGCCCAGTCTTCTTTGAAAGATTAGCCCGGGTAATCAAGCTCCATCACTGA
AA sequence Show only first row Show all	>Lus10042422 pacid=23153937 polypeptide=Lus10042422 locus=Lus10042422.g ID=Lus10042422.BGIv1.0 annot-version=v1.0 MGWRYRAGLGLIAMVVFIWVACAEITQRIFDKYEHPFALTYLGVSLMLLHLPIAFLKDWLSSLFGGIKDEIQLQSHTNYSNNTSSSSEPETNKITRSIGL NHKDLSEREEGRPLISNDQVVGQHGIDHQLLNKQIAPQLGSSEIAKCCLYLAPIWFLSEYLSNLALVYTSVASTTVISSTSGLFTLAFGAILRQESVNAA KVVAVVISMAGVAMTTVGKTWEIDERSATPQTRKHCIDGDILSLLAAITYALFTVLLKRSTGTQGHNVDMQNFLGYIGLFTLVGFWWLSWPLSAIGIEPR FSFPDSASIDEVVVLNSFLDSFLADYFWALSVIWTTPLVATLGTSLTIPLAMVADMVIHGRHYSAIYIFGCVQIDLCISVLGFSQLVGVNQHCHHHLQNL PIKSAEELIQHLKDENNKLHSEVSELRIEVTSIRSEKDVECAEYQKRLMEETEKIERIQKLLDESCSVKDGTTIQRKSGEVLNSSTRRKAGKSNNAGGTI EIDECTATPAPNKQPLNLLNAARQNNDRNDEVMSHEVSNGSRIMTRKRSREPRTEKEDGIRIHGSAGPAKKRIKESARDSPQGDGEPTNCQFQALIECLL GMKLSPVNQNGGICISAMHQTSGYSFSLTRVQNSTIGEAELVYRVAALGTFDRVAPEWTRSVIMFSISMCPVFFERLARVIKLHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	0	1
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	2.0	0.9130
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	4.0	0.8972
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	4.9	0.9124
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	6.5	0.8833
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	6.7	0.8925
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	7.3	0.9009
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	10.5	0.8658
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	14.5	0.8500
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	15.7	0.8415
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	16.0	0.8524

Compare expression of checked genes

Lus10042422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.